miRNA display CGI


Results 81 - 100 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 226071 0.72 0.361167
Target:  5'- aGGCGCGcccCGGCcGCGGCCGgcccgucaCGCCCa -3'
miRNA:   3'- -UCGUGCac-GCCGaUGCCGGCg-------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 134215 0.72 0.366341
Target:  5'- cGCugGUGCcGCU-UGGCCgaguagcugcccgcGCCGCCCu -3'
miRNA:   3'- uCGugCACGcCGAuGCCGG--------------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 149746 0.72 0.368575
Target:  5'- uGGCAgGUcuucuGCGGCgaggGCGGCCGCgcgguaCGCCUc -3'
miRNA:   3'- -UCGUgCA-----CGCCGa---UGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 78138 0.72 0.368575
Target:  5'- gGGCGCGUuaGCGGCgGCGGCCGCgaacgaggcaCGaUCCu -3'
miRNA:   3'- -UCGUGCA--CGCCGaUGCCGGCG----------GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 127419 0.72 0.371567
Target:  5'- cAGCGCGUucacguaggccgccaGCGGCUcguCGGCCaGCUGgCCg -3'
miRNA:   3'- -UCGUGCA---------------CGCCGAu--GCCGG-CGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 60668 0.72 0.376086
Target:  5'- gGGCACGaUGCucuucguGCUGCGGCCGCgCGggggaCCCg -3'
miRNA:   3'- -UCGUGC-ACGc------CGAUGCCGGCG-GC-----GGG- -5'
14136 3' -63.3 NC_003521.1 + 130943 0.72 0.376086
Target:  5'- cGCACGcaguuacugGUGGCccc-GCCGCCGCCCg -3'
miRNA:   3'- uCGUGCa--------CGCCGaugcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 83495 0.72 0.353863
Target:  5'- uGCcCGUaGCGGCUGCGGUagaugaaGCCGUUCa -3'
miRNA:   3'- uCGuGCA-CGCCGAUGCCGg------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 17193 0.72 0.353863
Target:  5'- cGCACGUcGgGGCUAUGGCgagagaagagCGUCGCCg -3'
miRNA:   3'- uCGUGCA-CgCCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 200582 0.72 0.346664
Target:  5'- gAGCugcCGgagGCGGCccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG--AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 43477 0.73 0.325702
Target:  5'- cAGCGCG-GCGGCcgUGCuGGCCGCgGCggCCa -3'
miRNA:   3'- -UCGUGCaCGCCG--AUG-CCGGCGgCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 117235 0.73 0.325702
Target:  5'- cGGcCGCG-GCGGCUcccgGC-GCCGCCGCCa -3'
miRNA:   3'- -UC-GUGCaCGCCGA----UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 101037 0.73 0.332583
Target:  5'- cGCcCGUGCaGCUccAUGGCgGCCGCCg -3'
miRNA:   3'- uCGuGCACGcCGA--UGCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 218394 0.73 0.332583
Target:  5'- aAGCGCGgGCGGUacuCGGCCacGCCGCgCa -3'
miRNA:   3'- -UCGUGCaCGCCGau-GCCGG--CGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 56497 0.73 0.339571
Target:  5'- cAGUAC-UGCGGCUgACGGCCGCgGUa- -3'
miRNA:   3'- -UCGUGcACGCCGA-UGCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 102784 0.72 0.346664
Target:  5'- uGCGCGaUGaCGcGCcgGCGGCCGCCaGCUCg -3'
miRNA:   3'- uCGUGC-AC-GC-CGa-UGCCGGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 43860 0.72 0.346664
Target:  5'- aGGCGCcccgGcCGGCUcccgGGCCGUCGCCCa -3'
miRNA:   3'- -UCGUGca--C-GCCGAug--CCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117589 0.72 0.346664
Target:  5'- gGGCGCG-GC-GCUACGaccaccuaCCGCCGCCCc -3'
miRNA:   3'- -UCGUGCaCGcCGAUGCc-------GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 225587 0.72 0.346664
Target:  5'- uGGCGCucgGCGGCcucgcgcuCGGCCGCCugcaGCCCc -3'
miRNA:   3'- -UCGUGca-CGCCGau------GCCGGCGG----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 150653 0.72 0.376086
Target:  5'- uGCGCGacgaagGCGGCUcuccgGCGGCggCGCCGCUg -3'
miRNA:   3'- uCGUGCa-----CGCCGA-----UGCCG--GCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.