miRNA display CGI


Results 101 - 120 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 186860 0.72 0.391416
Target:  5'- cGGCgGCGUGCaGC-ACGGCuCGUCgGCCCa -3'
miRNA:   3'- -UCG-UGCACGcCGaUGCCG-GCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 74183 0.72 0.391416
Target:  5'- uGCGCc-GCGGCgccCGGCgCGCgGCCCg -3'
miRNA:   3'- uCGUGcaCGCCGau-GCCG-GCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 164442 0.72 0.394531
Target:  5'- cAGCGCcaccGCGGCcGCGGCCgucacggucgccgcuGCCGCCg -3'
miRNA:   3'- -UCGUGca--CGCCGaUGCCGG---------------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 136782 0.71 0.399232
Target:  5'- uGCGCGacaGCgGGCUcACGGUcaCGCUGCCCg -3'
miRNA:   3'- uCGUGCa--CG-CCGA-UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 144091 0.71 0.399232
Target:  5'- uGCugGgcuucugccucaUGCGGCUGCuGGaCCGCCGCggCCu -3'
miRNA:   3'- uCGugC------------ACGCCGAUG-CC-GGCGGCG--GG- -5'
14136 3' -63.3 NC_003521.1 + 78138 0.72 0.368575
Target:  5'- gGGCGCGUuaGCGGCgGCGGCCGCgaacgaggcaCGaUCCu -3'
miRNA:   3'- -UCGUGCA--CGCCGaUGCCGGCG----------GC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 149746 0.72 0.368575
Target:  5'- uGGCAgGUcuucuGCGGCgaggGCGGCCGCgcgguaCGCCUc -3'
miRNA:   3'- -UCGUgCA-----CGCCGa---UGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 56497 0.73 0.339571
Target:  5'- cAGUAC-UGCGGCUgACGGCCGCgGUa- -3'
miRNA:   3'- -UCGUGcACGCCGA-UGCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 102784 0.72 0.346664
Target:  5'- uGCGCGaUGaCGcGCcgGCGGCCGCCaGCUCg -3'
miRNA:   3'- uCGUGC-AC-GC-CGa-UGCCGGCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 43860 0.72 0.346664
Target:  5'- aGGCGCcccgGcCGGCUcccgGGCCGUCGCCCa -3'
miRNA:   3'- -UCGUGca--C-GCCGAug--CCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 117589 0.72 0.346664
Target:  5'- gGGCGCG-GC-GCUACGaccaccuaCCGCCGCCCc -3'
miRNA:   3'- -UCGUGCaCGcCGAUGCc-------GGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 225587 0.72 0.346664
Target:  5'- uGGCGCucgGCGGCcucgcgcuCGGCCGCCugcaGCCCc -3'
miRNA:   3'- -UCGUGca-CGCCGau------GCCGGCGG----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 200582 0.72 0.346664
Target:  5'- gAGCugcCGgagGCGGCccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG--AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 17193 0.72 0.353863
Target:  5'- cGCACGUcGgGGCUAUGGCgagagaagagCGUCGCCg -3'
miRNA:   3'- uCGUGCA-CgCCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 83495 0.72 0.353863
Target:  5'- uGCcCGUaGCGGCUGCGGUagaugaaGCCGUUCa -3'
miRNA:   3'- uCGuGCA-CGCCGAUGCCGg------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 131853 0.72 0.353863
Target:  5'- gGGCugGUucaagGCGGCcACGGCCaucguGCCGCgCg -3'
miRNA:   3'- -UCGugCA-----CGCCGaUGCCGG-----CGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 35470 0.72 0.361167
Target:  5'- cAGguCGUGCacGGCgcaGCuGCCGCCGCCg -3'
miRNA:   3'- -UCguGCACG--CCGa--UGcCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 167400 0.72 0.361167
Target:  5'- gGGCACGcuagugGgGGCgcuuCGGCUGCUGUCCu -3'
miRNA:   3'- -UCGUGCa-----CgCCGau--GCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 226071 0.72 0.361167
Target:  5'- aGGCGCGcccCGGCcGCGGCCGgcccgucaCGCCCa -3'
miRNA:   3'- -UCGUGCac-GCCGaUGCCGGCg-------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 134215 0.72 0.366341
Target:  5'- cGCugGUGCcGCU-UGGCCgaguagcugcccgcGCCGCCCu -3'
miRNA:   3'- uCGugCACGcCGAuGCCGG--------------CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.