miRNA display CGI


Results 61 - 80 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 181191 0.72 0.346664
Target:  5'- cGCACcaacgccUGCGaGCcGCGGUCGCCGCCg -3'
miRNA:   3'- uCGUGc------ACGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 14201 0.72 0.368575
Target:  5'- aAGCugGUGU-GCUGCGGCgagccccugaCGCCGCUg -3'
miRNA:   3'- -UCGugCACGcCGAUGCCG----------GCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 179379 0.78 0.159008
Target:  5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3'
miRNA:   3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103654 0.77 0.196061
Target:  5'- cAGCuCGgcgGCGGCcgcUGCGGCCGCgGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCG---AUGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 93913 0.75 0.229901
Target:  5'- uGGCugGUcGCGGCaaGCGGCgacuacCGCUGCCCg -3'
miRNA:   3'- -UCGugCA-CGCCGa-UGCCG------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 204893 0.75 0.245856
Target:  5'- uGGC-CGcGCGGCgggACGGUgGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa--UGCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 32211 0.74 0.280507
Target:  5'- cGCG-GUGacuGGCUAUGGCCGCCGCa- -3'
miRNA:   3'- uCGUgCACg--CCGAUGCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 154591 0.74 0.292261
Target:  5'- uGCACGUcaaggagcucaagGCcGCcgGCGuGCCGCCGCCCu -3'
miRNA:   3'- uCGUGCA-------------CGcCGa-UGC-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 75063 0.73 0.312259
Target:  5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3'
miRNA:   3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 163384 0.73 0.318927
Target:  5'- gGGCACcaacgGCGGCauccucuCGGCCGUgGCCCc -3'
miRNA:   3'- -UCGUGca---CGCCGau-----GCCGGCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 137995 0.7 0.473828
Target:  5'- uGGCGCGcuucucgcaGCGccGCUACuuGCUGCCGCCCg -3'
miRNA:   3'- -UCGUGCa--------CGC--CGAUGc-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 17457 0.7 0.473828
Target:  5'- cGCgAUGUcGCuGCUGaccaaGGCCGCCGCCg -3'
miRNA:   3'- uCG-UGCA-CGcCGAUg----CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 89736 0.72 0.376086
Target:  5'- gGGCACGgggGCGGUgACGGCaGCCGgCg -3'
miRNA:   3'- -UCGUGCa--CGCCGaUGCCGgCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 354 0.72 0.376086
Target:  5'- gAGCugcCGgagGCGGCgccUGCGaCCGCUGCCCg -3'
miRNA:   3'- -UCGu--GCa--CGCCG---AUGCcGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14448 0.71 0.407148
Target:  5'- cGGC-CcUGCGGCgGCGucaGCCGCCGCUCc -3'
miRNA:   3'- -UCGuGcACGCCGaUGC---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 207144 0.71 0.415161
Target:  5'- cAGCguuACGUGCgGGCcACGGCCgGUCGCUg -3'
miRNA:   3'- -UCG---UGCACG-CCGaUGCCGG-CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 112750 0.71 0.431473
Target:  5'- cAGCGCGagcccauggGCGGCaucgGCGGCgCGUCGgCCa -3'
miRNA:   3'- -UCGUGCa--------CGCCGa---UGCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 16714 0.7 0.445629
Target:  5'- cGCGCGUGaugcgcggcgaguuCGGCgaccgcCGGCgCGCgCGCCCg -3'
miRNA:   3'- uCGUGCAC--------------GCCGau----GCCG-GCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 5303 0.7 0.456628
Target:  5'- cGGCAUGUuucGCGGggGCGGCgugcccCGCCGgCCg -3'
miRNA:   3'- -UCGUGCA---CGCCgaUGCCG------GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 208412 0.7 0.456628
Target:  5'- aGGC-CGUGCgccacgGGCUGCuGuGUCGCaCGCCCg -3'
miRNA:   3'- -UCGuGCACG------CCGAUG-C-CGGCG-GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.