miRNA display CGI


Results 81 - 100 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 240622 0.72 0.376086
Target:  5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3'
miRNA:   3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 108952 0.72 0.391416
Target:  5'- cGaCACGcGCGGCacgAUGGCCgugGCCGCCUu -3'
miRNA:   3'- uC-GUGCaCGCCGa--UGCCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 118533 0.71 0.412747
Target:  5'- aAGC-CGggauuccccacGCGGCUugGGCCGUaguauguaaguagaCGCCCa -3'
miRNA:   3'- -UCGuGCa----------CGCCGAugCCGGCG--------------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 196481 0.71 0.42327
Target:  5'- cAGCGCGUcGCGGaUGCGGUgcaGCuUGCCCa -3'
miRNA:   3'- -UCGUGCA-CGCCgAUGCCGg--CG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 206306 0.71 0.431473
Target:  5'- cGCGCGUcuCGGCccGCGGCCGCUaCCUg -3'
miRNA:   3'- uCGUGCAc-GCCGa-UGCCGGCGGcGGG- -5'
14136 3' -63.3 NC_003521.1 + 5303 0.7 0.456628
Target:  5'- cGGCAUGUuucGCGGggGCGGCgugcccCGCCGgCCg -3'
miRNA:   3'- -UCGUGCA---CGCCgaUGCCG------GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 208412 0.7 0.456628
Target:  5'- aGGC-CGUGCgccacgGGCUGCuGuGUCGCaCGCCCg -3'
miRNA:   3'- -UCGuGCACG------CCGAUG-C-CGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 163384 0.73 0.318927
Target:  5'- gGGCACcaacgGCGGCauccucuCGGCCGUgGCCCc -3'
miRNA:   3'- -UCGUGca---CGCCGau-----GCCGGCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 75063 0.73 0.312259
Target:  5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3'
miRNA:   3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 154591 0.74 0.292261
Target:  5'- uGCACGUcaaggagcucaagGCcGCcgGCGuGCCGCCGCCCu -3'
miRNA:   3'- uCGUGCA-------------CGcCGa-UGC-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 109490 0.7 0.481673
Target:  5'- cGGCACGggGCGaagcGCUgcACGGCCaggugacGCCGCCg -3'
miRNA:   3'- -UCGUGCa-CGC----CGA--UGCCGG-------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 187176 0.7 0.491347
Target:  5'- aAGCaACGUGCGGagACGGCC--CGCCUg -3'
miRNA:   3'- -UCG-UGCACGCCgaUGCCGGcgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 209724 0.7 0.491347
Target:  5'- uGCGCc-GCGuGUacCGGCCGCCGCCg -3'
miRNA:   3'- uCGUGcaCGC-CGauGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 122863 0.69 0.500219
Target:  5'- cGCugGUGC-----UGGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGccgauGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 125413 0.69 0.50916
Target:  5'- cGGCGC-UGaguccggaGGCcgugGCGGCCGCCcgcGCCCu -3'
miRNA:   3'- -UCGUGcACg-------CCGa---UGCCGGCGG---CGGG- -5'
14136 3' -63.3 NC_003521.1 + 179379 0.78 0.159008
Target:  5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3'
miRNA:   3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 103654 0.77 0.196061
Target:  5'- cAGCuCGgcgGCGGCcgcUGCGGCCGCgGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCG---AUGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 93913 0.75 0.229901
Target:  5'- uGGCugGUcGCGGCaaGCGGCgacuacCGCUGCCCg -3'
miRNA:   3'- -UCGugCA-CGCCGa-UGCCG------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 204893 0.75 0.245856
Target:  5'- uGGC-CGcGCGGCgggACGGUgGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa--UGCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 32211 0.74 0.280507
Target:  5'- cGCG-GUGacuGGCUAUGGCCGCCGCa- -3'
miRNA:   3'- uCGUgCACg--CCGAUGCCGGCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.