Results 101 - 120 of 535 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14136 | 3' | -63.3 | NC_003521.1 | + | 17004 | 0.69 | 0.500219 |
Target: 5'- aGGCGCccGCGGUgGCGGCgGCgcagGCCCg -3' miRNA: 3'- -UCGUGcaCGCCGaUGCCGgCGg---CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 178014 | 0.69 | 0.50916 |
Target: 5'- uAGgACGgagGCGGCcACGGUCGUCaaagacgccggGCCCg -3' miRNA: 3'- -UCgUGCa--CGCCGaUGCCGGCGG-----------CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 152307 | 0.69 | 0.518169 |
Target: 5'- uGCGCcUGCacGGCUGCGaGUCGCUGCgCg -3' miRNA: 3'- uCGUGcACG--CCGAUGC-CGGCGGCGgG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 137533 | 0.69 | 0.52724 |
Target: 5'- cGGCGCGUgGUGGCcuacgacgagACGG-CGCCGgCCg -3' miRNA: 3'- -UCGUGCA-CGCCGa---------UGCCgGCGGCgGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 177803 | 0.69 | 0.536369 |
Target: 5'- cGCugGUG-GGCgucgUGGgCGCCGCCg -3' miRNA: 3'- uCGugCACgCCGau--GCCgGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 196481 | 0.71 | 0.42327 |
Target: 5'- cAGCGCGUcGCGGaUGCGGUgcaGCuUGCCCa -3' miRNA: 3'- -UCGUGCA-CGCCgAUGCCGg--CG-GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 118533 | 0.71 | 0.412747 |
Target: 5'- aAGC-CGggauuccccacGCGGCUugGGCCGUaguauguaaguagaCGCCCa -3' miRNA: 3'- -UCGuGCa----------CGCCGAugCCGGCG--------------GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 179379 | 0.78 | 0.159008 |
Target: 5'- cGCGCGUGCGGaugacCUGCaGCCGCuCGCUCa -3' miRNA: 3'- uCGUGCACGCC-----GAUGcCGGCG-GCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 103654 | 0.77 | 0.196061 |
Target: 5'- cAGCuCGgcgGCGGCcgcUGCGGCCGCgGCCa -3' miRNA: 3'- -UCGuGCa--CGCCG---AUGCCGGCGgCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 93913 | 0.75 | 0.229901 |
Target: 5'- uGGCugGUcGCGGCaaGCGGCgacuacCGCUGCCCg -3' miRNA: 3'- -UCGugCA-CGCCGa-UGCCG------GCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 204893 | 0.75 | 0.245856 |
Target: 5'- uGGC-CGcGCGGCgggACGGUgGCCGCCg -3' miRNA: 3'- -UCGuGCaCGCCGa--UGCCGgCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 32211 | 0.74 | 0.280507 |
Target: 5'- cGCG-GUGacuGGCUAUGGCCGCCGCa- -3' miRNA: 3'- uCGUgCACg--CCGAUGCCGGCGGCGgg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 154591 | 0.74 | 0.292261 |
Target: 5'- uGCACGUcaaggagcucaagGCcGCcgGCGuGCCGCCGCCCu -3' miRNA: 3'- uCGUGCA-------------CGcCGa-UGC-CGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 75063 | 0.73 | 0.312259 |
Target: 5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3' miRNA: 3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 163384 | 0.73 | 0.318927 |
Target: 5'- gGGCACcaacgGCGGCauccucuCGGCCGUgGCCCc -3' miRNA: 3'- -UCGUGca---CGCCGau-----GCCGGCGgCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 95211 | 0.72 | 0.351692 |
Target: 5'- cGGCACcggGUGCgacugcagcagcgaGGCcACGGCCGCCGCg- -3' miRNA: 3'- -UCGUG---CACG--------------CCGaUGCCGGCGGCGgg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 212664 | 0.72 | 0.361167 |
Target: 5'- gAGgGCGUcGCGGgcAUGGUCGCCGCCg -3' miRNA: 3'- -UCgUGCA-CGCCgaUGCCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 73 | 0.72 | 0.376086 |
Target: 5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3' miRNA: 3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 240622 | 0.72 | 0.376086 |
Target: 5'- cGGCgGCGUGCGGCg--GGCCGgCCGgUCg -3' miRNA: 3'- -UCG-UGCACGCCGaugCCGGC-GGCgGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 108952 | 0.72 | 0.391416 |
Target: 5'- cGaCACGcGCGGCacgAUGGCCgugGCCGCCUu -3' miRNA: 3'- uC-GUGCaCGCCGa--UGCCGG---CGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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