miRNA display CGI


Results 121 - 140 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 109745 0.74 0.280507
Target:  5'- gAGCcCGcGCGaGCcGCGGUCGCCGCCa -3'
miRNA:   3'- -UCGuGCaCGC-CGaUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 7740 0.74 0.29289
Target:  5'- cGGCGCGaGCGGCggagGCGGCgGCaGUCCc -3'
miRNA:   3'- -UCGUGCaCGCCGa---UGCCGgCGgCGGG- -5'
14136 3' -63.3 NC_003521.1 + 110524 0.69 0.52724
Target:  5'- uGgAUGcGCGGCgccGCGGCC-UCGCCCa -3'
miRNA:   3'- uCgUGCaCGCCGa--UGCCGGcGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 122613 0.69 0.50916
Target:  5'- cGGCGa---CGGCgGCGGCCGCgCGCUCg -3'
miRNA:   3'- -UCGUgcacGCCGaUGCCGGCG-GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 92225 0.69 0.500219
Target:  5'- gAGCGCuGUGagGGCccgACGGgCGCCGCgCg -3'
miRNA:   3'- -UCGUG-CACg-CCGa--UGCCgGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 91750 0.72 0.353863
Target:  5'- gAGgGCGUGCGaGagcGCGGCCGCgucgaaGCCCa -3'
miRNA:   3'- -UCgUGCACGC-Cga-UGCCGGCGg-----CGGG- -5'
14136 3' -63.3 NC_003521.1 + 75124 0.72 0.368575
Target:  5'- cGCACGgugGaCGGCUuuCGGCgGCCGaCCUg -3'
miRNA:   3'- uCGUGCa--C-GCCGAu-GCCGgCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 89736 0.72 0.376086
Target:  5'- gGGCACGgggGCGGUgACGGCaGCCGgCg -3'
miRNA:   3'- -UCGUGCa--CGCCGaUGCCGgCGGCgGg -5'
14136 3' -63.3 NC_003521.1 + 74932 0.72 0.391416
Target:  5'- cAGCGCGggGUGGUguac-CCGCCGCCCg -3'
miRNA:   3'- -UCGUGCa-CGCCGaugccGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 14448 0.71 0.407148
Target:  5'- cGGC-CcUGCGGCgGCGucaGCCGCCGCUCc -3'
miRNA:   3'- -UCGuGcACGCCGaUGC---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 53430 0.71 0.42327
Target:  5'- cGGCAagGUGCggaGGCUGuuGCCGCUGCUCa -3'
miRNA:   3'- -UCGUg-CACG---CCGAUgcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 112750 0.71 0.431473
Target:  5'- cAGCGCGagcccauggGCGGCaucgGCGGCgCGUCGgCCa -3'
miRNA:   3'- -UCGUGCa--------CGCCGa---UGCCG-GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 103325 0.7 0.448154
Target:  5'- uGCACGUcccagaccucGCGGCgccGCGacacGCCGgCGCCCu -3'
miRNA:   3'- uCGUGCA----------CGCCGa--UGC----CGGCgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 5303 0.7 0.456628
Target:  5'- cGGCAUGUuucGCGGggGCGGCgugcccCGCCGgCCg -3'
miRNA:   3'- -UCGUGCA---CGCCgaUGCCG------GCGGCgGG- -5'
14136 3' -63.3 NC_003521.1 + 99192 0.7 0.465186
Target:  5'- gGGuCACGU-CGGUgACGGCCGCgGCgCa -3'
miRNA:   3'- -UC-GUGCAcGCCGaUGCCGGCGgCGgG- -5'
14136 3' -63.3 NC_003521.1 + 17457 0.7 0.473828
Target:  5'- cGCgAUGUcGCuGCUGaccaaGGCCGCCGCCg -3'
miRNA:   3'- uCG-UGCA-CGcCGAUg----CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 89924 0.7 0.477307
Target:  5'- gGGCGCGcagucgaugacgcCGGCgUGCGGCCGCaccucguucuCGCCCg -3'
miRNA:   3'- -UCGUGCac-----------GCCG-AUGCCGGCG----------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 23480 0.7 0.482549
Target:  5'- aAGUACGa--GGac-CGGCCGCCGUCCg -3'
miRNA:   3'- -UCGUGCacgCCgauGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 91988 0.7 0.491347
Target:  5'- cGGCACGcaccucgGCcgagGGCagGCGGUCGCCGCgCa -3'
miRNA:   3'- -UCGUGCa------CG----CCGa-UGCCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 139752 0.69 0.49755
Target:  5'- aGGcCGCGUGCcgacggcaggauccGGCcguCGGCgGCCGCCa -3'
miRNA:   3'- -UC-GUGCACG--------------CCGau-GCCGgCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.