miRNA display CGI


Results 141 - 160 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 170967 0.68 0.610024
Target:  5'- uGCGCG-GCGGCcucauCGGCagcgucaucgaccUGCCGCUCu -3'
miRNA:   3'- uCGUGCaCGCCGau---GCCG-------------GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 47997 0.68 0.601538
Target:  5'- cGGaCGCGccGCcgGGCUucuGCGGCUGCUGCCa -3'
miRNA:   3'- -UC-GUGCa-CG--CCGA---UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 145684 0.69 0.52724
Target:  5'- uGC-CGU-CGGC-GCGGCCGCCuuaCCCa -3'
miRNA:   3'- uCGuGCAcGCCGaUGCCGGCGGc--GGG- -5'
14136 3' -63.3 NC_003521.1 + 152307 0.69 0.518169
Target:  5'- uGCGCcUGCacGGCUGCGaGUCGCUGCgCg -3'
miRNA:   3'- uCGUGcACG--CCGAUGC-CGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 122863 0.69 0.500219
Target:  5'- cGCugGUGC-----UGGCCGCCGCCg -3'
miRNA:   3'- uCGugCACGccgauGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 139752 0.69 0.49755
Target:  5'- aGGcCGCGUGCcgacggcaggauccGGCcguCGGCgGCCGCCa -3'
miRNA:   3'- -UC-GUGCACG--------------CCGau-GCCGgCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 187176 0.7 0.491347
Target:  5'- aAGCaACGUGCGGagACGGCC--CGCCUg -3'
miRNA:   3'- -UCG-UGCACGCCgaUGCCGGcgGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 23480 0.7 0.482549
Target:  5'- aAGUACGa--GGac-CGGCCGCCGUCCg -3'
miRNA:   3'- -UCGUGCacgCCgauGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 197001 0.7 0.473828
Target:  5'- cGGC-CGgcgGCGGCUGaccCGGCUGCUGCg- -3'
miRNA:   3'- -UCGuGCa--CGCCGAU---GCCGGCGGCGgg -5'
14136 3' -63.3 NC_003521.1 + 115950 0.7 0.473828
Target:  5'- cGCGC-UGUGcCUGCuGCCGCCGCUCu -3'
miRNA:   3'- uCGUGcACGCcGAUGcCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 177803 0.69 0.536369
Target:  5'- cGCugGUG-GGCgucgUGGgCGCCGCCg -3'
miRNA:   3'- uCGugCACgCCGau--GCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 117461 0.69 0.545553
Target:  5'- uGUcgGUGCGGCUgucggaggccACGGCCGCgGCgCu -3'
miRNA:   3'- uCGugCACGCCGA----------UGCCGGCGgCGgG- -5'
14136 3' -63.3 NC_003521.1 + 175427 0.68 0.599654
Target:  5'- cGCGCGUcugagugGCGuGCUcggcguacgaucgGCGGCgCGCCGUCUc -3'
miRNA:   3'- uCGUGCA-------CGC-CGA-------------UGCCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 172102 0.68 0.592127
Target:  5'- aAGUcCGUGCGG--GCGGCCGacggCGCCa -3'
miRNA:   3'- -UCGuGCACGCCgaUGCCGGCg---GCGGg -5'
14136 3' -63.3 NC_003521.1 + 156728 0.68 0.582742
Target:  5'- cGCAuguuCGUG-GGCU-CGGUCuuuGCCGCCCc -3'
miRNA:   3'- uCGU----GCACgCCGAuGCCGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 31078 0.68 0.582742
Target:  5'- cGGUACuc-CGGCUGCcguGGCUGCCGCUg -3'
miRNA:   3'- -UCGUGcacGCCGAUG---CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 168146 0.68 0.573386
Target:  5'- gGGUggACGggGCGGaaUAgGGgCGCCGCCCa -3'
miRNA:   3'- -UCG--UGCa-CGCCg-AUgCCgGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 195850 0.68 0.564066
Target:  5'- cGCGCG-GCagGGUUcggggaucGCGGUguCGCCGCCCu -3'
miRNA:   3'- uCGUGCaCG--CCGA--------UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 210363 0.69 0.554787
Target:  5'- gGGCAgGUGCGcGUcauCGGCacccucgGCCGCCUg -3'
miRNA:   3'- -UCGUgCACGC-CGau-GCCGg------CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 74473 0.69 0.554787
Target:  5'- gAGCACGUccugGGCUuCGaGCUgguGCCGCCCu -3'
miRNA:   3'- -UCGUGCAcg--CCGAuGC-CGG---CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.