miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14139 3' -61.6 NC_003521.1 + 123121 0.66 0.797642
Target:  5'- cGCCGGGCcGCUguacgaaguacggcaGCgGCGCGUCGGAa -3'
miRNA:   3'- -CGGCCUGaCGGg--------------UGgUGCGCGGUCUg -5'
14139 3' -61.6 NC_003521.1 + 57840 0.66 0.796799
Target:  5'- gGCCGGugacGCCgaaCGCCGuCGCuGCUAGACa -3'
miRNA:   3'- -CGGCCuga-CGG---GUGGU-GCG-CGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 70701 0.66 0.796799
Target:  5'- cGCCGcaaGCUGCgucggCGCC-UGCGCCGGAUg -3'
miRNA:   3'- -CGGCc--UGACGg----GUGGuGCGCGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 200991 0.66 0.796799
Target:  5'- cGCCGGAg-GCCaAgCAgGCGCCAucGGCg -3'
miRNA:   3'- -CGGCCUgaCGGgUgGUgCGCGGU--CUG- -5'
14139 3' -61.6 NC_003521.1 + 181375 0.66 0.796799
Target:  5'- aUCGGACaGCCUGUa--GCGCCAGACc -3'
miRNA:   3'- cGGCCUGaCGGGUGgugCGCGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 179564 0.66 0.796799
Target:  5'- cCUGcGACacugGCCCcacACCGCGaCGCuCAGACa -3'
miRNA:   3'- cGGC-CUGa---CGGG---UGGUGC-GCG-GUCUG- -5'
14139 3' -61.6 NC_003521.1 + 214793 0.66 0.796799
Target:  5'- cGCCGucCUcUUCACCGCcgucggGCGCCGGGCg -3'
miRNA:   3'- -CGGCcuGAcGGGUGGUG------CGCGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 84922 0.66 0.796799
Target:  5'- aGCCGGcCUGCUCGCagggcgUGCGCUcGAUg -3'
miRNA:   3'- -CGGCCuGACGGGUGgu----GCGCGGuCUG- -5'
14139 3' -61.6 NC_003521.1 + 25367 0.66 0.796799
Target:  5'- uUCGuGGCU-CCCucgGCCugGCGCCAGcACc -3'
miRNA:   3'- cGGC-CUGAcGGG---UGGugCGCGGUC-UG- -5'
14139 3' -61.6 NC_003521.1 + 144230 0.66 0.796799
Target:  5'- cGCCuGcCUGCUCAUCAUggGCGCgCAGAUc -3'
miRNA:   3'- -CGGcCuGACGGGUGGUG--CGCG-GUCUG- -5'
14139 3' -61.6 NC_003521.1 + 68509 0.66 0.796799
Target:  5'- cGCCGcGA---CCgGCCugGCGCCAccGACa -3'
miRNA:   3'- -CGGC-CUgacGGgUGGugCGCGGU--CUG- -5'
14139 3' -61.6 NC_003521.1 + 218899 0.66 0.796799
Target:  5'- cCCGaGGCcGCCCGCCAgggucucgacUGCGUCAG-Ca -3'
miRNA:   3'- cGGC-CUGaCGGGUGGU----------GCGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 149618 0.66 0.796799
Target:  5'- cCCGuACugUGCCCACgACGCGCCc-GCg -3'
miRNA:   3'- cGGCcUG--ACGGGUGgUGCGCGGucUG- -5'
14139 3' -61.6 NC_003521.1 + 54283 0.66 0.796799
Target:  5'- uGCCGGccCUGCCUcCCACGgaGCCcccgcuGGCg -3'
miRNA:   3'- -CGGCCu-GACGGGuGGUGCg-CGGu-----CUG- -5'
14139 3' -61.6 NC_003521.1 + 764 0.66 0.796799
Target:  5'- cGCCGGAg-GCCaAgCAgGCGCCAucGGCg -3'
miRNA:   3'- -CGGCCUgaCGGgUgGUgCGCGGU--CUG- -5'
14139 3' -61.6 NC_003521.1 + 115512 0.66 0.796799
Target:  5'- gGCCGGA---CCCACCGcCGCGuCCGcgaacGACg -3'
miRNA:   3'- -CGGCCUgacGGGUGGU-GCGC-GGU-----CUG- -5'
14139 3' -61.6 NC_003521.1 + 239492 0.66 0.796799
Target:  5'- aGCCGGuuggaccgauACaGCCgCGCCACuCGCCGG-Cg -3'
miRNA:   3'- -CGGCC----------UGaCGG-GUGGUGcGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 201276 0.66 0.796799
Target:  5'- gGCCGG-CgucggGgCCACCGaccUGCGCCAG-Cu -3'
miRNA:   3'- -CGGCCuGa----CgGGUGGU---GCGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 1048 0.66 0.796799
Target:  5'- gGCCGG-CgucggGgCCACCGaccUGCGCCAG-Cu -3'
miRNA:   3'- -CGGCCuGa----CgGGUGGU---GCGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 13872 0.66 0.796799
Target:  5'- -gCGGGCgGCgCCGCCAUGgauuuCGCCGGGg -3'
miRNA:   3'- cgGCCUGaCG-GGUGGUGC-----GCGGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.