miRNA display CGI


Results 1 - 20 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14139 3' -61.6 NC_003521.1 + 200 0.67 0.697767
Target:  5'- aCCGGcCgGCCCGCCGCaCGCCGc-- -3'
miRNA:   3'- cGGCCuGaCGGGUGGUGcGCGGUcug -5'
14139 3' -61.6 NC_003521.1 + 764 0.66 0.796799
Target:  5'- cGCCGGAg-GCCaAgCAgGCGCCAucGGCg -3'
miRNA:   3'- -CGGCCUgaCGGgUgGUgCGCGGU--CUG- -5'
14139 3' -61.6 NC_003521.1 + 1001 0.68 0.634893
Target:  5'- gGCCGGcCguacgGCUucuacgcgcgcaucaCGCCGCGCaGCCAGAUg -3'
miRNA:   3'- -CGGCCuGa----CGG---------------GUGGUGCG-CGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 1048 0.66 0.796799
Target:  5'- gGCCGG-CgucggGgCCACCGaccUGCGCCAG-Cu -3'
miRNA:   3'- -CGGCCuGa----CgGGUGGU---GCGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 2206 0.69 0.611905
Target:  5'- -aCGGACgGCCgGCCcuACGC-CCAGGCc -3'
miRNA:   3'- cgGCCUGaCGGgUGG--UGCGcGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 4980 0.67 0.725776
Target:  5'- cCCGuGuGgUGCCuCACCAuccCGCGUCAGACg -3'
miRNA:   3'- cGGC-C-UgACGG-GUGGU---GCGCGGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 7814 0.68 0.669324
Target:  5'- aGCUGGACggcGUCaagGCCAUccgGCGCCAGAa -3'
miRNA:   3'- -CGGCCUGa--CGGg--UGGUG---CGCGGUCUg -5'
14139 3' -61.6 NC_003521.1 + 11576 0.68 0.688325
Target:  5'- cGCCGGACucugcggggucUGCgCAagaucuUCACGUGCCAaGACu -3'
miRNA:   3'- -CGGCCUG-----------ACGgGU------GGUGCGCGGU-CUG- -5'
14139 3' -61.6 NC_003521.1 + 11841 0.73 0.396639
Target:  5'- uGCCGGucCUGCgCCGCC-CGCGCaccuccuCGGACg -3'
miRNA:   3'- -CGGCCu-GACG-GGUGGuGCGCG-------GUCUG- -5'
14139 3' -61.6 NC_003521.1 + 12089 0.75 0.283883
Target:  5'- cGCC--GCUGCUCACCACGCaGCCcGACa -3'
miRNA:   3'- -CGGccUGACGGGUGGUGCG-CGGuCUG- -5'
14139 3' -61.6 NC_003521.1 + 13872 0.66 0.796799
Target:  5'- -gCGGGCgGCgCCGCCAUGgauuuCGCCGGGg -3'
miRNA:   3'- cgGCCUGaCG-GGUGGUGC-----GCGGUCUg -5'
14139 3' -61.6 NC_003521.1 + 13966 0.7 0.527023
Target:  5'- cGCUGGAgcccugaugggcCUGCCCGgCGCGgCGgCGGGCg -3'
miRNA:   3'- -CGGCCU------------GACGGGUgGUGC-GCgGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 14739 0.68 0.688325
Target:  5'- uGuuGGGCgugacggGCCgGCCGCG-GCCGGGg -3'
miRNA:   3'- -CggCCUGa------CGGgUGGUGCgCGGUCUg -5'
14139 3' -61.6 NC_003521.1 + 15756 0.68 0.658825
Target:  5'- cCCGGGCagcagcaUGCCCgaGCUACGCGaCCAGu- -3'
miRNA:   3'- cGGCCUG-------ACGGG--UGGUGCGC-GGUCug -5'
14139 3' -61.6 NC_003521.1 + 16074 0.68 0.688325
Target:  5'- uGCCGGA--GCCC-CgACGCGCUGGcCg -3'
miRNA:   3'- -CGGCCUgaCGGGuGgUGCGCGGUCuG- -5'
14139 3' -61.6 NC_003521.1 + 16391 0.73 0.389534
Target:  5'- cCUGGACcgcucGCCCACCACgcaGCGCCuGGCc -3'
miRNA:   3'- cGGCCUGa----CGGGUGGUG---CGCGGuCUG- -5'
14139 3' -61.6 NC_003521.1 + 16686 0.68 0.65978
Target:  5'- gGCUGGGacGCCuuCACCAUGUGgCAGACg -3'
miRNA:   3'- -CGGCCUgaCGG--GUGGUGCGCgGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 17754 0.67 0.707162
Target:  5'- gGCCGGggaACUgGCCgUACCGCcgGCGgCGGACg -3'
miRNA:   3'- -CGGCC---UGA-CGG-GUGGUG--CGCgGUCUG- -5'
14139 3' -61.6 NC_003521.1 + 18074 0.68 0.650217
Target:  5'- cGCCGuGGCcguaGCCCagACgGCGCGCgAGAUg -3'
miRNA:   3'- -CGGC-CUGa---CGGG--UGgUGCGCGgUCUG- -5'
14139 3' -61.6 NC_003521.1 + 18657 0.68 0.688325
Target:  5'- cGCaCGGAcCUGCUgGCCACggggGCGCUgcaGGACc -3'
miRNA:   3'- -CG-GCCU-GACGGgUGGUG----CGCGG---UCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.