miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14139 5' -48.8 NC_003521.1 + 55900 0.66 0.999907
Target:  5'- cGGUCGCCGAcccuccgACGGCGgcggcaacGGggGUg- -3'
miRNA:   3'- aCCAGUGGUUua-----UGUCGC--------UCuuCAgc -5'
14139 5' -48.8 NC_003521.1 + 156657 0.66 0.999907
Target:  5'- -aGUCGCCAccuGUACGGgGAGGAcGUgGa -3'
miRNA:   3'- acCAGUGGUu--UAUGUCgCUCUU-CAgC- -5'
14139 5' -48.8 NC_003521.1 + 110389 0.66 0.999907
Target:  5'- -cGUCGCCc-GUAguGCGAaGAAGUCc -3'
miRNA:   3'- acCAGUGGuuUAUguCGCU-CUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 226468 0.66 0.999907
Target:  5'- gUGGgccaccagCACCAGGUACuggucGCGGGu-GUCGu -3'
miRNA:   3'- -ACCa-------GUGGUUUAUGu----CGCUCuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 119557 0.66 0.999907
Target:  5'- cGG-CGCCGugcguAUAgAGUGAGAAGUg- -3'
miRNA:   3'- aCCaGUGGUu----UAUgUCGCUCUUCAgc -5'
14139 5' -48.8 NC_003521.1 + 109477 0.66 0.999907
Target:  5'- cUGGgaacaugcgCGCCAGGcgcucCAGCGAGuGGUCGc -3'
miRNA:   3'- -ACCa--------GUGGUUUau---GUCGCUCuUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 53419 0.66 0.999907
Target:  5'- cGGgcgcCACCGA--GCAGCGGaAGGUCu -3'
miRNA:   3'- aCCa---GUGGUUuaUGUCGCUcUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 23883 0.66 0.999907
Target:  5'- uUGGgu-CCGGGgcaACAGCGuauGggGUCGa -3'
miRNA:   3'- -ACCaguGGUUUa--UGUCGCu--CuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 102044 0.66 0.999907
Target:  5'- cGGUUGCCGcacgaGGUGuAGAGGUCGu -3'
miRNA:   3'- aCCAGUGGUuuaugUCGC-UCUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 137027 0.66 0.999879
Target:  5'- cGGUCaucucGCCGGAgcacgGCGGCGAGGugcgCGa -3'
miRNA:   3'- aCCAG-----UGGUUUa----UGUCGCUCUuca-GC- -5'
14139 5' -48.8 NC_003521.1 + 153357 0.66 0.999879
Target:  5'- cGGcCGCCGc-UACAGCGcuGAGUCc -3'
miRNA:   3'- aCCaGUGGUuuAUGUCGCucUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 24226 0.66 0.999879
Target:  5'- ---gCACCAGcggguuggGCAGCGGGcGGUCGg -3'
miRNA:   3'- accaGUGGUUua------UGUCGCUCuUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 34992 0.66 0.999879
Target:  5'- aGGUCuCCGGGgcCAGCGAGcgcuugcGUCGu -3'
miRNA:   3'- aCCAGuGGUUUauGUCGCUCuu-----CAGC- -5'
14139 5' -48.8 NC_003521.1 + 59436 0.66 0.999879
Target:  5'- cGG-CGCCGccgccgGCAGCGAgcucGAGGUCu -3'
miRNA:   3'- aCCaGUGGUuua---UGUCGCU----CUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 128158 0.66 0.999879
Target:  5'- aGGcCugCAGGcAgGGCGuGggGUCGu -3'
miRNA:   3'- aCCaGugGUUUaUgUCGCuCuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 48922 0.66 0.999879
Target:  5'- cGG-CGCCGAcuAUcaGCGGCGGGGAGggagaagCGg -3'
miRNA:   3'- aCCaGUGGUU--UA--UGUCGCUCUUCa------GC- -5'
14139 5' -48.8 NC_003521.1 + 168485 0.66 0.999879
Target:  5'- aGGUCgAUCAuggGCGGCGAGAcggAGgCGg -3'
miRNA:   3'- aCCAG-UGGUuuaUGUCGCUCU---UCaGC- -5'
14139 5' -48.8 NC_003521.1 + 164050 0.66 0.999845
Target:  5'- gUGGUgGCCucggccACGGCGAcggucgccucgGAGGUCGu -3'
miRNA:   3'- -ACCAgUGGuuua--UGUCGCU-----------CUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 44599 0.66 0.999841
Target:  5'- aGG-CGCCAAGU-CAGCcaGAGAaugagacgagccgGGUCGg -3'
miRNA:   3'- aCCaGUGGUUUAuGUCG--CUCU-------------UCAGC- -5'
14139 5' -48.8 NC_003521.1 + 126248 0.66 0.999802
Target:  5'- aGGUCcacgcCCGAGUacuGCAGCGGGAucUCGc -3'
miRNA:   3'- aCCAGu----GGUUUA---UGUCGCUCUucAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.