miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14139 5' -48.8 NC_003521.1 + 111644 1.1 0.021078
Target:  5'- aUGGUCACCAAAUACAGCGAGAAGUCGc -3'
miRNA:   3'- -ACCAGUGGUUUAUGUCGCUCUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 191677 0.86 0.409814
Target:  5'- aGGUCGCCGAggACGGCGAGgcGUCu -3'
miRNA:   3'- aCCAGUGGUUuaUGUCGCUCuuCAGc -5'
14139 5' -48.8 NC_003521.1 + 195245 0.8 0.72974
Target:  5'- aGGcCACCGAGUAgGGCGAGAAGg-- -3'
miRNA:   3'- aCCaGUGGUUUAUgUCGCUCUUCagc -5'
14139 5' -48.8 NC_003521.1 + 215785 0.78 0.797316
Target:  5'- -cGUCACCAugacggGCAGCGAGGAGcCGg -3'
miRNA:   3'- acCAGUGGUuua---UGUCGCUCUUCaGC- -5'
14139 5' -48.8 NC_003521.1 + 200196 0.78 0.806423
Target:  5'- aGGUCcuCCGacGAUGCGGCGAGAAG-CGg -3'
miRNA:   3'- aCCAGu-GGU--UUAUGUCGCUCUUCaGC- -5'
14139 5' -48.8 NC_003521.1 + 195480 0.77 0.865098
Target:  5'- gGGUCGCCGuuccacguCGGCGAaGAGGUCGu -3'
miRNA:   3'- aCCAGUGGUuuau----GUCGCU-CUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 87648 0.76 0.907017
Target:  5'- cGG-CAUCGAggACAGCGuGGAGUCGu -3'
miRNA:   3'- aCCaGUGGUUuaUGUCGCuCUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 187878 0.76 0.908887
Target:  5'- cGGUCACCAccucgggcggcacggGCGGCGGGGgcaGGUCGa -3'
miRNA:   3'- aCCAGUGGUuua------------UGUCGCUCU---UCAGC- -5'
14139 5' -48.8 NC_003521.1 + 188034 0.74 0.94019
Target:  5'- cGGaCAUCAGccgGUGCAGCGGGuuGUCGa -3'
miRNA:   3'- aCCaGUGGUU---UAUGUCGCUCuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 134174 0.74 0.953442
Target:  5'- aGGUgGCCAugaugACGGCGAugauGAGGUCGu -3'
miRNA:   3'- aCCAgUGGUuua--UGUCGCU----CUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 152806 0.73 0.957379
Target:  5'- cGGUCACCGgcagguGGUACAGCucGgcGUCGc -3'
miRNA:   3'- aCCAGUGGU------UUAUGUCGcuCuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 168651 0.73 0.957379
Target:  5'- cGGUCAUCGAGgcaugccgACGGCGccGGAGGUCc -3'
miRNA:   3'- aCCAGUGGUUUa-------UGUCGC--UCUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 171277 0.73 0.961082
Target:  5'- cGGUCACgAugcuCAGCGAGAGGaUCa -3'
miRNA:   3'- aCCAGUGgUuuauGUCGCUCUUC-AGc -5'
14139 5' -48.8 NC_003521.1 + 172199 0.73 0.964556
Target:  5'- aGGUCugCGuggACAGCGccGAGUCGa -3'
miRNA:   3'- aCCAGugGUuuaUGUCGCucUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 126591 0.73 0.970841
Target:  5'- -cGUCguGCCGguGGUAguGCGGGAAGUCGg -3'
miRNA:   3'- acCAG--UGGU--UUAUguCGCUCUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 69683 0.72 0.973391
Target:  5'- cGGUCccgauaauagaacAUCGAGUugAGCGGGAAGUUc -3'
miRNA:   3'- aCCAG-------------UGGUUUAugUCGCUCUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 53147 0.72 0.978706
Target:  5'- aUGGUCuugaACCAcgucggggAcgGCGGCGAGgAGGUCGg -3'
miRNA:   3'- -ACCAG----UGGU--------UuaUGUCGCUC-UUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 164762 0.72 0.980726
Target:  5'- cGGUCGCCGggcgaaccauaguGAcGCGGCGGGcacGGGUCGu -3'
miRNA:   3'- aCCAGUGGU-------------UUaUGUCGCUC---UUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 34837 0.71 0.984879
Target:  5'- cGGUCAgCAGGUAgGGCGAGugaGAGcCGc -3'
miRNA:   3'- aCCAGUgGUUUAUgUCGCUC---UUCaGC- -5'
14139 5' -48.8 NC_003521.1 + 58059 0.71 0.986599
Target:  5'- cGGcCACCcGAUACGGCGaAGAGGg-- -3'
miRNA:   3'- aCCaGUGGuUUAUGUCGC-UCUUCagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.