miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14139 5' -48.8 NC_003521.1 + 3979 0.67 0.999602
Target:  5'- cGGggCACCGu---CAGCGcGGAGGUCu -3'
miRNA:   3'- aCCa-GUGGUuuauGUCGC-UCUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 11777 0.66 0.999802
Target:  5'- cGGcUCAUC---UGCuGCGAGGAGUCc -3'
miRNA:   3'- aCC-AGUGGuuuAUGuCGCUCUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 23883 0.66 0.999907
Target:  5'- uUGGgu-CCGGGgcaACAGCGuauGggGUCGa -3'
miRNA:   3'- -ACCaguGGUUUa--UGUCGCu--CuuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 24226 0.66 0.999879
Target:  5'- ---gCACCAGcggguuggGCAGCGGGcGGUCGg -3'
miRNA:   3'- accaGUGGUUua------UGUCGCUCuUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 26969 0.67 0.999748
Target:  5'- aUGGaCGCCc--UGCAGCGAGAcugGGcCGa -3'
miRNA:   3'- -ACCaGUGGuuuAUGUCGCUCU---UCaGC- -5'
14139 5' -48.8 NC_003521.1 + 31573 0.67 0.99973
Target:  5'- aGGUCGCgggacacgcuggcaCGGAUACGG-GAGAuGUCGu -3'
miRNA:   3'- aCCAGUG--------------GUUUAUGUCgCUCUuCAGC- -5'
14139 5' -48.8 NC_003521.1 + 32145 0.67 0.999505
Target:  5'- cGGUgCACCAA--GCGGCG-GAAGgCGc -3'
miRNA:   3'- aCCA-GUGGUUuaUGUCGCuCUUCaGC- -5'
14139 5' -48.8 NC_003521.1 + 34074 0.7 0.993059
Target:  5'- gGGUUgACCucGUGCAGgGAGGuguGGUCGa -3'
miRNA:   3'- aCCAG-UGGuuUAUGUCgCUCU---UCAGC- -5'
14139 5' -48.8 NC_003521.1 + 34837 0.71 0.984879
Target:  5'- cGGUCAgCAGGUAgGGCGAGugaGAGcCGc -3'
miRNA:   3'- aCCAGUgGUUUAUgUCGCUC---UUCaGC- -5'
14139 5' -48.8 NC_003521.1 + 34992 0.66 0.999879
Target:  5'- aGGUCuCCGGGgcCAGCGAGcgcuugcGUCGu -3'
miRNA:   3'- aCCAGuGGUUUauGUCGCUCuu-----CAGC- -5'
14139 5' -48.8 NC_003521.1 + 39501 0.69 0.997423
Target:  5'- aUGGUgGCCAccagcacgauccaggGGUcgcGCGGCGAGAgcuggcgcaGGUCGg -3'
miRNA:   3'- -ACCAgUGGU---------------UUA---UGUCGCUCU---------UCAGC- -5'
14139 5' -48.8 NC_003521.1 + 44599 0.66 0.999841
Target:  5'- aGG-CGCCAAGU-CAGCcaGAGAaugagacgagccgGGUCGg -3'
miRNA:   3'- aCCaGUGGUUUAuGUCG--CUCU-------------UCAGC- -5'
14139 5' -48.8 NC_003521.1 + 48922 0.66 0.999879
Target:  5'- cGG-CGCCGAcuAUcaGCGGCGGGGAGggagaagCGg -3'
miRNA:   3'- aCCaGUGGUU--UA--UGUCGCUCUUCa------GC- -5'
14139 5' -48.8 NC_003521.1 + 53147 0.72 0.978706
Target:  5'- aUGGUCuugaACCAcgucggggAcgGCGGCGAGgAGGUCGg -3'
miRNA:   3'- -ACCAG----UGGU--------UuaUGUCGCUC-UUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 53419 0.66 0.999907
Target:  5'- cGGgcgcCACCGA--GCAGCGGaAGGUCu -3'
miRNA:   3'- aCCa---GUGGUUuaUGUCGCUcUUCAGc -5'
14139 5' -48.8 NC_003521.1 + 53599 0.68 0.998643
Target:  5'- cUGGUgGCCGAAggGgAGCGAGucacGGUCc -3'
miRNA:   3'- -ACCAgUGGUUUa-UgUCGCUCu---UCAGc -5'
14139 5' -48.8 NC_003521.1 + 54786 0.68 0.998742
Target:  5'- aGGUCAgguacaugaaguuacCCAGcaGCGGCGuGGAGUUGu -3'
miRNA:   3'- aCCAGU---------------GGUUuaUGUCGCuCUUCAGC- -5'
14139 5' -48.8 NC_003521.1 + 55900 0.66 0.999907
Target:  5'- cGGUCGCCGAcccuccgACGGCGgcggcaacGGggGUg- -3'
miRNA:   3'- aCCAGUGGUUua-----UGUCGC--------UCuuCAgc -5'
14139 5' -48.8 NC_003521.1 + 58059 0.71 0.986599
Target:  5'- cGGcCACCcGAUACGGCGaAGAGGg-- -3'
miRNA:   3'- aCCaGUGGuUUAUGUCGC-UCUUCagc -5'
14139 5' -48.8 NC_003521.1 + 59436 0.66 0.999879
Target:  5'- cGG-CGCCGccgccgGCAGCGAgcucGAGGUCu -3'
miRNA:   3'- aCCaGUGGUuua---UGUCGCU----CUUCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.