miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1414 3' -59.8 NC_001335.1 + 46652 0.66 0.455974
Target:  5'- -cCUCUCgauGugGCGGgGCAcGCCGUAg -3'
miRNA:   3'- caGAGAGg--UugCGCCgCGU-CGGCGUg -5'
1414 3' -59.8 NC_001335.1 + 9586 0.66 0.44627
Target:  5'- -aCUC-CCAccuACGCGGCcaaGGCCGaCGCa -3'
miRNA:   3'- caGAGaGGU---UGCGCCGcg-UCGGC-GUG- -5'
1414 3' -59.8 NC_001335.1 + 19355 0.66 0.427216
Target:  5'- aUCUCuggcagaagaUCCAAuUGCGGCGCuGCaaGCGCg -3'
miRNA:   3'- cAGAG----------AGGUU-GCGCCGCGuCGg-CGUG- -5'
1414 3' -59.8 NC_001335.1 + 47967 0.66 0.427216
Target:  5'- gGUCcgCUgUCGGCGaCGGUGCAGUCGaCACc -3'
miRNA:   3'- -CAGa-GA-GGUUGC-GCCGCGUCGGC-GUG- -5'
1414 3' -59.8 NC_001335.1 + 5594 0.66 0.427216
Target:  5'- aGUCUCcggugcgCCGGCcguaGCGGCaggcaccguacGCAGCCaGCGCa -3'
miRNA:   3'- -CAGAGa------GGUUG----CGCCG-----------CGUCGG-CGUG- -5'
1414 3' -59.8 NC_001335.1 + 48171 0.66 0.427216
Target:  5'- -cCUCUCCGAUucCGGCGU--CCGCGCc -3'
miRNA:   3'- caGAGAGGUUGc-GCCGCGucGGCGUG- -5'
1414 3' -59.8 NC_001335.1 + 34248 0.67 0.39956
Target:  5'- gGUCgacCUCCAuCGCGGCGauGCCGUcgaGCg -3'
miRNA:   3'- -CAGa--GAGGUuGCGCCGCguCGGCG---UG- -5'
1414 3' -59.8 NC_001335.1 + 40497 0.67 0.39956
Target:  5'- -cUUCUUCGACGCGGUGU--CCGCGu -3'
miRNA:   3'- caGAGAGGUUGCGCCGCGucGGCGUg -5'
1414 3' -59.8 NC_001335.1 + 24114 0.67 0.390599
Target:  5'- gGUCUCcgCaCAGaGCGGCGguGCUgGCGCu -3'
miRNA:   3'- -CAGAGa-G-GUUgCGCCGCguCGG-CGUG- -5'
1414 3' -59.8 NC_001335.1 + 37466 0.67 0.356095
Target:  5'- aGUCcagUCUCCGAUGCGGUGUaguAGUCGaucaGCu -3'
miRNA:   3'- -CAG---AGAGGUUGCGCCGCG---UCGGCg---UG- -5'
1414 3' -59.8 NC_001335.1 + 17367 0.68 0.347811
Target:  5'- gGUgUCUCCAucgGCGGCGCGcucaucGgCGCGCu -3'
miRNA:   3'- -CAgAGAGGUug-CGCCGCGU------CgGCGUG- -5'
1414 3' -59.8 NC_001335.1 + 39815 0.68 0.34699
Target:  5'- gGUCUCacggucgUCCAcgGCGGCGCucGCgGCGCu -3'
miRNA:   3'- -CAGAG-------AGGUugCGCCGCGu-CGgCGUG- -5'
1414 3' -59.8 NC_001335.1 + 42336 0.68 0.323791
Target:  5'- aUCgg-CCGAC-CGGCGCgAGCCGCGu -3'
miRNA:   3'- cAGagaGGUUGcGCCGCG-UCGGCGUg -5'
1414 3' -59.8 NC_001335.1 + 50152 0.69 0.27263
Target:  5'- cUUUCUCCAGCuugcCGGCGUAGCacaccuugGCACa -3'
miRNA:   3'- cAGAGAGGUUGc---GCCGCGUCGg-------CGUG- -5'
1414 3' -59.8 NC_001335.1 + 4873 0.69 0.27263
Target:  5'- cGUCgggCUCCAGCacggagGCGGCGgGGUcuacuCGCACa -3'
miRNA:   3'- -CAGa--GAGGUUG------CGCCGCgUCG-----GCGUG- -5'
1414 3' -59.8 NC_001335.1 + 47159 0.7 0.240205
Target:  5'- aUCUggUCGACGUGGaUGCAGCCGaCGCg -3'
miRNA:   3'- cAGAgaGGUUGCGCC-GCGUCGGC-GUG- -5'
1414 3' -59.8 NC_001335.1 + 47053 0.71 0.222336
Target:  5'- aUCUCUCgCuuGCGguuaCGGUGCGGCUGCGCc -3'
miRNA:   3'- cAGAGAG-Gu-UGC----GCCGCGUCGGCGUG- -5'
1414 3' -59.8 NC_001335.1 + 42442 0.71 0.222336
Target:  5'- -cCUUguaUCCAGCGCGGUGCAuCCGUAg -3'
miRNA:   3'- caGAG---AGGUUGCGCCGCGUcGGCGUg -5'
1414 3' -59.8 NC_001335.1 + 16251 0.75 0.107272
Target:  5'- -gUUCggagCCGGCGCuGGCGUAGUCGCGCu -3'
miRNA:   3'- caGAGa---GGUUGCG-CCGCGUCGGCGUG- -5'
1414 3' -59.8 NC_001335.1 + 47151 1.08 0.000342
Target:  5'- cGUCUCUCCAACGCGGCGCAGCCGCACc -3'
miRNA:   3'- -CAGAGAGGUUGCGCCGCGUCGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.