miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 73113 0.66 0.983163
Target:  5'- uCCaCCGUGGCcacggagguGCUGcacggcGGGGgCAGCGGCg -3'
miRNA:   3'- -GGaGGUACUG---------CGAC------UUUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 129539 0.66 0.983163
Target:  5'- uUCUCCAUcgcggcGGCGCU---GGCaCGGCGGg -3'
miRNA:   3'- -GGAGGUA------CUGCGAcuuUCG-GUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 160765 0.66 0.983163
Target:  5'- uUUCCuuucGCGCgugccGCCGGCGGCa -3'
miRNA:   3'- gGAGGuac-UGCGacuuuCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 144971 0.66 0.983163
Target:  5'- gCUgCGcGACaucCUGA--GCCAGCGGCa -3'
miRNA:   3'- gGAgGUaCUGc--GACUuuCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 111357 0.66 0.983163
Target:  5'- uUCUCCucggaucccGGCGCcGGGA-CUAGCGGCg -3'
miRNA:   3'- -GGAGGua-------CUGCGaCUUUcGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 150922 0.66 0.983163
Target:  5'- cCUUCCAcGGCGUgu-GGGCCGagcGCGGUc -3'
miRNA:   3'- -GGAGGUaCUGCGacuUUCGGU---CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 124434 0.66 0.983163
Target:  5'- uCgUCCGgcgaGACGUgguuGGGCCgcGGCGGCa -3'
miRNA:   3'- -GgAGGUa---CUGCGacu-UUCGG--UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 139927 0.66 0.983163
Target:  5'- gCUCCucggGGCacgGCcgGAAGGCCAGCucguccagGGCg -3'
miRNA:   3'- gGAGGua--CUG---CGa-CUUUCGGUCG--------CCG- -5'
14140 3' -54.5 NC_003521.1 + 138140 0.66 0.983163
Target:  5'- aCUUCCAcugGGUGCUGc---CCGGCGGCu -3'
miRNA:   3'- -GGAGGUa--CUGCGACuuucGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 165751 0.66 0.983162
Target:  5'- gCCaCCAUGGCGUcGGAGG-CGGUGGg -3'
miRNA:   3'- -GGaGGUACUGCGaCUUUCgGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 151894 0.66 0.983162
Target:  5'- gCUCUGUGAuCGCUGcucGCCcGUGGUc -3'
miRNA:   3'- gGAGGUACU-GCGACuuuCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 108192 0.66 0.983162
Target:  5'- aCCgCCgGUGGCGCcgccgccgagucUGGAAGCCGuuGCGGa -3'
miRNA:   3'- -GGaGG-UACUGCG------------ACUUUCGGU--CGCCg -5'
14140 3' -54.5 NC_003521.1 + 21464 0.66 0.983162
Target:  5'- gCUUCAcGGCGUgc--AGCUGGCGGCc -3'
miRNA:   3'- gGAGGUaCUGCGacuuUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 122510 0.66 0.983162
Target:  5'- --gCCA--ACGCggcggcgGGcAGGCCGGCGGCg -3'
miRNA:   3'- ggaGGUacUGCGa------CU-UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 107450 0.66 0.981211
Target:  5'- --aCCGccGCGCUGu--GCCGGCGGa -3'
miRNA:   3'- ggaGGUacUGCGACuuuCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 219180 0.66 0.981211
Target:  5'- gUUCCAgUGGCgGCUGAgccccAGGCCcaugauGGCGGUc -3'
miRNA:   3'- gGAGGU-ACUG-CGACU-----UUCGG------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 204006 0.66 0.981211
Target:  5'- gCCggcCCGUGGCGCgUGAucacGGCCuGCccgaaaGGCg -3'
miRNA:   3'- -GGa--GGUACUGCG-ACUu---UCGGuCG------CCG- -5'
14140 3' -54.5 NC_003521.1 + 44725 0.66 0.981211
Target:  5'- -aUCCugGUGACGCUGAuccgGGGUCuGCaGCu -3'
miRNA:   3'- ggAGG--UACUGCGACU----UUCGGuCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 216820 0.66 0.981211
Target:  5'- aCgCCGgaUGGCGCgcagGAGgucgcAGCCcGCGGCg -3'
miRNA:   3'- gGaGGU--ACUGCGa---CUU-----UCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 130282 0.66 0.981211
Target:  5'- cCCUCUccGGCuacCUGGgcgAGGCC-GCGGCg -3'
miRNA:   3'- -GGAGGuaCUGc--GACU---UUCGGuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.