miRNA display CGI


Results 21 - 40 of 679 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 5' -65 NC_003521.1 + 43425 0.66 0.659835
Target:  5'- aCUGCgUGCCcGaCGaggaGGCGGCGGCGGCc -3'
miRNA:   3'- -GGCG-GCGGcC-GCg---UCGCCGUCGCUGc -5'
14140 5' -65 NC_003521.1 + 92674 0.66 0.659835
Target:  5'- aUGCaGCUGGUGUuccUGGCGGUGACGg -3'
miRNA:   3'- gGCGgCGGCCGCGuc-GCCGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 144183 0.66 0.659835
Target:  5'- gCCGCCuGCCGcGCGCuggagaacggcaAGCuGCAGCagugcgccGACGc -3'
miRNA:   3'- -GGCGG-CGGC-CGCG------------UCGcCGUCG--------CUGC- -5'
14140 5' -65 NC_003521.1 + 137557 0.66 0.659835
Target:  5'- aCGgCGCCGGCcgAGCaGCAGUGcACGc -3'
miRNA:   3'- gGCgGCGGCCGcgUCGcCGUCGC-UGC- -5'
14140 5' -65 NC_003521.1 + 87243 0.66 0.659835
Target:  5'- gCUGCUGCagguGGUGgAGCGGCuguGCGcCGu -3'
miRNA:   3'- -GGCGGCGg---CCGCgUCGCCGu--CGCuGC- -5'
14140 5' -65 NC_003521.1 + 91298 0.66 0.659835
Target:  5'- gCGCCGCCcgacucgaagaGGUcgggucccagGUAGuCGcGCAGCGGCGu -3'
miRNA:   3'- gGCGGCGG-----------CCG----------CGUC-GC-CGUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 206357 0.66 0.659835
Target:  5'- -aGCUGCUGGC-CuGCGGCGaCGACc -3'
miRNA:   3'- ggCGGCGGCCGcGuCGCCGUcGCUGc -5'
14140 5' -65 NC_003521.1 + 171720 0.66 0.659835
Target:  5'- aCGUCGCCGGCGUGGUGuuGGaacugcCGACc -3'
miRNA:   3'- gGCGGCGGCCGCGUCGCcgUC------GCUGc -5'
14140 5' -65 NC_003521.1 + 212865 0.66 0.659835
Target:  5'- gCGCCGCCuGGCGUuucuaccGCGGUuuccuUGACGa -3'
miRNA:   3'- gGCGGCGG-CCGCGu------CGCCGuc---GCUGC- -5'
14140 5' -65 NC_003521.1 + 61569 0.66 0.658909
Target:  5'- aCGCUGCUGGC-CGGCgaguucaGGCGccagaaggcccGCGGCGg -3'
miRNA:   3'- gGCGGCGGCCGcGUCG-------CCGU-----------CGCUGC- -5'
14140 5' -65 NC_003521.1 + 238503 0.66 0.658909
Target:  5'- -aGCCccaggagGCCGGCGCgAGCaGguGCGAg- -3'
miRNA:   3'- ggCGG-------CGGCCGCG-UCGcCguCGCUgc -5'
14140 5' -65 NC_003521.1 + 113510 0.66 0.658909
Target:  5'- gCCGUCaCCGagagcguGCGCAGCGGCuGgGAUc -3'
miRNA:   3'- -GGCGGcGGC-------CGCGUCGCCGuCgCUGc -5'
14140 5' -65 NC_003521.1 + 49849 0.66 0.65613
Target:  5'- gCUGCCGCuCGGCcucguccagcauGCucaugauGGCGGUcguggcgugcguguGGCGACGg -3'
miRNA:   3'- -GGCGGCG-GCCG------------CG-------UCGCCG--------------UCGCUGC- -5'
14140 5' -65 NC_003521.1 + 140331 0.66 0.65057
Target:  5'- aCGCC-CgCGGUgccaccugGCGGCGGUAGCaACGg -3'
miRNA:   3'- gGCGGcG-GCCG--------CGUCGCCGUCGcUGC- -5'
14140 5' -65 NC_003521.1 + 95790 0.66 0.65057
Target:  5'- gUGCCGCuCGGCcacgcgacCAGCGcGuCGGCGAUGu -3'
miRNA:   3'- gGCGGCG-GCCGc-------GUCGC-C-GUCGCUGC- -5'
14140 5' -65 NC_003521.1 + 33107 0.66 0.65057
Target:  5'- gCCaGCCGaugaCGGCGUAGCGGgccuucucCAGCacgccgauGACGa -3'
miRNA:   3'- -GG-CGGCg---GCCGCGUCGCC--------GUCG--------CUGC- -5'
14140 5' -65 NC_003521.1 + 198458 0.66 0.65057
Target:  5'- -gGCCGUCGGC-UGGCGGUGuCGACa -3'
miRNA:   3'- ggCGGCGGCCGcGUCGCCGUcGCUGc -5'
14140 5' -65 NC_003521.1 + 137520 0.66 0.65057
Target:  5'- cCUGCUGgaguaCCGGCGCguGGUGGCcuaCGACGa -3'
miRNA:   3'- -GGCGGC-----GGCCGCG--UCGCCGuc-GCUGC- -5'
14140 5' -65 NC_003521.1 + 125881 0.66 0.65057
Target:  5'- gCCGCCGCUGcGCgaGCAGCucuccaGCAGCcGCu -3'
miRNA:   3'- -GGCGGCGGC-CG--CGUCGc-----CGUCGcUGc -5'
14140 5' -65 NC_003521.1 + 35491 0.66 0.65057
Target:  5'- gCCGCCGCCgaggaGGCGCcGUaGGguGuCGAgGu -3'
miRNA:   3'- -GGCGGCGG-----CCGCGuCG-CCguC-GCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.