miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 124287 0.66 0.996643
Target:  5'- cUGAcGAUCUCCaGAAagCGCgGCGaGGUg -3'
miRNA:   3'- aGCUuUUAGAGG-CUUa-GCGgCGC-CCA- -5'
14146 3' -52.5 NC_003521.1 + 148843 0.66 0.996643
Target:  5'- cCGu---UCgcgCCGGAUCgGCCGcCGGGUu -3'
miRNA:   3'- aGCuuuuAGa--GGCUUAG-CGGC-GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 85370 0.66 0.996643
Target:  5'- cUCGAcgGgcugCUgCGAcUCGCCcaGCGGGUc -3'
miRNA:   3'- -AGCUuuUa---GAgGCUuAGCGG--CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 119373 0.66 0.996643
Target:  5'- cCGggGAUgUCCGccgggaagaaGAUcaCGUCGUGGGUg -3'
miRNA:   3'- aGCuuUUAgAGGC----------UUA--GCGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 45276 0.66 0.996643
Target:  5'- cUGGAGAUCauggaCCGGG-CGCCGCuGGGc -3'
miRNA:   3'- aGCUUUUAGa----GGCUUaGCGGCG-CCCa -5'
14146 3' -52.5 NC_003521.1 + 177519 0.66 0.996643
Target:  5'- gCGGAGAUCUCUcauacacaGAAgCGCCGCGa-- -3'
miRNA:   3'- aGCUUUUAGAGG--------CUUaGCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 13860 0.66 0.996482
Target:  5'- gCGggGGUCUCUGcgggcGGcgccgccauggauuUCGCCGgGGGg -3'
miRNA:   3'- aGCuuUUAGAGGC-----UU--------------AGCGGCgCCCa -5'
14146 3' -52.5 NC_003521.1 + 202988 0.66 0.996083
Target:  5'- uUCGAucuacAGUCUCCGGGcggcUCGCCcgccaagaCGGGUu -3'
miRNA:   3'- -AGCUu----UUAGAGGCUU----AGCGGc-------GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 193287 0.66 0.996083
Target:  5'- cCGGGAcgggCgUCgGAGUCGgCGCGGGg -3'
miRNA:   3'- aGCUUUua--G-AGgCUUAGCgGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 189546 0.66 0.996023
Target:  5'- cCGAGAAaC-CCGAGUUGCugaucgaCGUGGGUa -3'
miRNA:   3'- aGCUUUUaGaGGCUUAGCG-------GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 46432 0.66 0.995449
Target:  5'- gCGAGGGUaUCCGGcgggGCUGCGGGg -3'
miRNA:   3'- aGCUUUUAgAGGCUuag-CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 135362 0.66 0.995449
Target:  5'- gCGcc-GUCUCCGcggcgguuAUCGCCcGCGGGc -3'
miRNA:   3'- aGCuuuUAGAGGCu-------UAGCGG-CGCCCa -5'
14146 3' -52.5 NC_003521.1 + 43796 0.66 0.995381
Target:  5'- uUCGAAAggggggccgccauGUCgcagcagCCGggUCagccgccgccgGCCGCGGGc -3'
miRNA:   3'- -AGCUUU-------------UAGa------GGCuuAG-----------CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 223939 0.66 0.994733
Target:  5'- cCGAGGGgg-UCGAGgcgGCCGCGGGg -3'
miRNA:   3'- aGCUUUUagaGGCUUag-CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 143304 0.66 0.994733
Target:  5'- gUCGucucUCUCCGuGGUCGCCcGCGGu- -3'
miRNA:   3'- -AGCuuuuAGAGGC-UUAGCGG-CGCCca -5'
14146 3' -52.5 NC_003521.1 + 95133 0.66 0.994262
Target:  5'- cUUGAAGAgCUCCGcGUCGUgcgagagcaggaacuCGCGGGc -3'
miRNA:   3'- -AGCUUUUaGAGGCuUAGCG---------------GCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 133484 0.66 0.993929
Target:  5'- gUCGAGGAUCaccuggcgCCGc--UGCUGCGGGg -3'
miRNA:   3'- -AGCUUUUAGa-------GGCuuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 123669 0.66 0.993929
Target:  5'- cUUGGAGGgagCCGGcgCGCUGCGGcGUg -3'
miRNA:   3'- -AGCUUUUagaGGCUuaGCGGCGCC-CA- -5'
14146 3' -52.5 NC_003521.1 + 125588 0.66 0.993929
Target:  5'- cUCGAcGcagauguacugcGUgUCCGuGUCGCCGCGGa- -3'
miRNA:   3'- -AGCUuU------------UAgAGGCuUAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 104957 0.67 0.993029
Target:  5'- cUCGAAGGUCgugCCGcgggggCGCCGCGa-- -3'
miRNA:   3'- -AGCUUUUAGa--GGCuua---GCGGCGCcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.