miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 7952 0.67 0.992025
Target:  5'- -------cCUCCaGAUCGCCGCGGuGUc -3'
miRNA:   3'- agcuuuuaGAGGcUUAGCGGCGCC-CA- -5'
14146 3' -52.5 NC_003521.1 + 148778 0.67 0.992025
Target:  5'- cUCGGcgGUCgcgCCGAGgaGCCGCGGc- -3'
miRNA:   3'- -AGCUuuUAGa--GGCUUagCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 93493 0.67 0.991919
Target:  5'- aCGAAGAg-UCCGAgggcgccuagcgcGUCGUgGUGGGUa -3'
miRNA:   3'- aGCUUUUagAGGCU-------------UAGCGgCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 132315 0.67 0.99091
Target:  5'- --cAAAAUCUCCcgcgugCGCCuGCGGGUg -3'
miRNA:   3'- agcUUUUAGAGGcuua--GCGG-CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 161122 0.67 0.99091
Target:  5'- gUCGGGAAUUgcaGGAUCaacgcgGCCGCGGGc -3'
miRNA:   3'- -AGCUUUUAGaggCUUAG------CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 29237 0.67 0.99091
Target:  5'- -aGGAcGUCUCCGGGgacacCGCCGCGaGcGUg -3'
miRNA:   3'- agCUUuUAGAGGCUUa----GCGGCGC-C-CA- -5'
14146 3' -52.5 NC_003521.1 + 124243 0.67 0.989676
Target:  5'- cCGAAGGg--UUGggUCGCCGCGcGGc -3'
miRNA:   3'- aGCUUUUagaGGCuuAGCGGCGC-CCa -5'
14146 3' -52.5 NC_003521.1 + 123475 0.67 0.989676
Target:  5'- gCGucag-CUCCGuguccGUCGCCGgCGGGg -3'
miRNA:   3'- aGCuuuuaGAGGCu----UAGCGGC-GCCCa -5'
14146 3' -52.5 NC_003521.1 + 114717 0.67 0.989676
Target:  5'- aCGAcgAGAUCgaccgcuggaUCCGGcaCGCCGUGGGg -3'
miRNA:   3'- aGCU--UUUAG----------AGGCUuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 216657 0.67 0.988315
Target:  5'- gCGAAGA-CUCCGcAUCuCCGCGGuGg -3'
miRNA:   3'- aGCUUUUaGAGGCuUAGcGGCGCC-Ca -5'
14146 3' -52.5 NC_003521.1 + 20920 0.67 0.988315
Target:  5'- cCGggGaccgGUCUCa--AUCGCaCGCGGGUc -3'
miRNA:   3'- aGCuuU----UAGAGgcuUAGCG-GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 150659 0.67 0.988172
Target:  5'- aCGAAGGcggcUCUCCGGcggcggCGCCGCugcugcuGGGUg -3'
miRNA:   3'- aGCUUUU----AGAGGCUua----GCGGCG-------CCCA- -5'
14146 3' -52.5 NC_003521.1 + 175971 0.68 0.986819
Target:  5'- cCGggGGUaC-CCGAgAUCGCCGUGGa- -3'
miRNA:   3'- aGCuuUUA-GaGGCU-UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 70339 0.68 0.986819
Target:  5'- gUGAcGAUCUUCGcGAUCGCCGCGc-- -3'
miRNA:   3'- aGCUuUUAGAGGC-UUAGCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 16418 0.68 0.984658
Target:  5'- aCGAGAcUCUgaugauaccgcagaCCGAAUUGuaaCCGCGGGUc -3'
miRNA:   3'- aGCUUUuAGA--------------GGCUUAGC---GGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 193453 0.68 0.983389
Target:  5'- cUCGGGcuUCUCCGGcuUCGUCuCGGGUu -3'
miRNA:   3'- -AGCUUuuAGAGGCUu-AGCGGcGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 228038 0.68 0.983389
Target:  5'- aUCGGAGAUCUgaggguaaUCGGggCGCacgCGCGGGUc -3'
miRNA:   3'- -AGCUUUUAGA--------GGCUuaGCG---GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 195111 0.68 0.981439
Target:  5'- gCGggGGUCcUCGucaucGUCGCCGCGGu- -3'
miRNA:   3'- aGCuuUUAGaGGCu----UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 215424 0.68 0.981029
Target:  5'- gCGAGcc-CUCCGugaagcagaGCCGCGGGUg -3'
miRNA:   3'- aGCUUuuaGAGGCuuag-----CGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 76755 0.68 0.979102
Target:  5'- aCGAcGAcCUCCGAggcgaccGUCGCCGUGGc- -3'
miRNA:   3'- aGCUuUUaGAGGCU-------UAGCGGCGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.