Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14146 | 3' | -52.5 | NC_003521.1 | + | 179941 | 0.68 | 0.977032 |
Target: 5'- cCGAAGAUCUCCGAGaa-CUGCGGc- -3' miRNA: 3'- aGCUUUUAGAGGCUUagcGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 190755 | 0.68 | 0.977032 |
Target: 5'- cCGAAGGUCUCaCGGGacUCGCU-CGGGa -3' miRNA: 3'- aGCUUUUAGAG-GCUU--AGCGGcGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 59042 | 0.69 | 0.971901 |
Target: 5'- aCGAGGAUCgcgacuaCCGGG-CGCUGUGGGc -3' miRNA: 3'- aGCUUUUAGa------GGCUUaGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 155672 | 0.69 | 0.965993 |
Target: 5'- gCGGAGGUCUggaCGAuucAUCGCCGCcgaGGGa -3' miRNA: 3'- aGCUUUUAGAg--GCU---UAGCGGCG---CCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 82812 | 0.69 | 0.965036 |
Target: 5'- aCGAuuAUCacaCCGcacgcuauuacacaAAUCGCCGCGGGc -3' miRNA: 3'- aGCUuuUAGa--GGC--------------UUAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 197378 | 0.7 | 0.95557 |
Target: 5'- uUUGGAGAggCUCUGGcUCGCCGCccGGGa -3' miRNA: 3'- -AGCUUUUa-GAGGCUuAGCGGCG--CCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 215635 | 0.7 | 0.943167 |
Target: 5'- gUGAGGAcggggCUCCGcauGGUCGCgGCGGGa -3' miRNA: 3'- aGCUUUUa----GAGGC---UUAGCGgCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 49736 | 0.7 | 0.942718 |
Target: 5'- aCGAGAcgCagcCCGccgccgccaccacGGUCGCCGCGGGa -3' miRNA: 3'- aGCUUUuaGa--GGC-------------UUAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 97 | 0.7 | 0.942718 |
Target: 5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3' miRNA: 3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 200325 | 0.7 | 0.942718 |
Target: 5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3' miRNA: 3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 240646 | 0.7 | 0.942718 |
Target: 5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3' miRNA: 3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 165013 | 0.71 | 0.933756 |
Target: 5'- gCGAGGAgg-CCGcGAUCGCCGCGGc- -3' miRNA: 3'- aGCUUUUagaGGC-UUAGCGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 164803 | 0.71 | 0.933756 |
Target: 5'- gUCGggGAcgaUC-CCGGAgCGcCCGCGGGg -3' miRNA: 3'- -AGCuuUU---AGaGGCUUaGC-GGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 129192 | 0.71 | 0.917898 |
Target: 5'- uUUGGGuuUCgCCGGcgguucgaccucGUCGCCGCGGGg -3' miRNA: 3'- -AGCUUuuAGaGGCU------------UAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 186511 | 0.72 | 0.912147 |
Target: 5'- gUCG-GGAUCUCgGGcgguGUCGCCaGCGGGg -3' miRNA: 3'- -AGCuUUUAGAGgCU----UAGCGG-CGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 4661 | 0.72 | 0.89352 |
Target: 5'- aCGggGGUUUCCGAAaCGCCGCa--- -3' miRNA: 3'- aGCuuUUAGAGGCUUaGCGGCGccca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 168117 | 0.72 | 0.88686 |
Target: 5'- gCGugGAUCgCCGAGgacgacagCGCCGUGGGUg -3' miRNA: 3'- aGCuuUUAGaGGCUUa-------GCGGCGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 172395 | 0.72 | 0.879283 |
Target: 5'- gUUGAGGGgcgCCGGcggagccGUCGCCGCGGGa -3' miRNA: 3'- -AGCUUUUagaGGCU-------UAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 119883 | 0.74 | 0.834388 |
Target: 5'- gUCGGu--UCUCCucGUCGCCccGCGGGUg -3' miRNA: 3'- -AGCUuuuAGAGGcuUAGCGG--CGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 60892 | 0.74 | 0.826124 |
Target: 5'- cUCGGAGAUCUUCGGcAUC-CCGCaGGGUc -3' miRNA: 3'- -AGCUUUUAGAGGCU-UAGcGGCG-CCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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