miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 97 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 4661 0.72 0.89352
Target:  5'- aCGggGGUUUCCGAAaCGCCGCa--- -3'
miRNA:   3'- aGCuuUUAGAGGCUUaGCGGCGccca -5'
14146 3' -52.5 NC_003521.1 + 7952 0.67 0.992025
Target:  5'- -------cCUCCaGAUCGCCGCGGuGUc -3'
miRNA:   3'- agcuuuuaGAGGcUUAGCGGCGCC-CA- -5'
14146 3' -52.5 NC_003521.1 + 13860 0.66 0.996482
Target:  5'- gCGggGGUCUCUGcgggcGGcgccgccauggauuUCGCCGgGGGg -3'
miRNA:   3'- aGCuuUUAGAGGC-----UU--------------AGCGGCgCCCa -5'
14146 3' -52.5 NC_003521.1 + 16418 0.68 0.984658
Target:  5'- aCGAGAcUCUgaugauaccgcagaCCGAAUUGuaaCCGCGGGUc -3'
miRNA:   3'- aGCUUUuAGA--------------GGCUUAGC---GGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 20920 0.67 0.988315
Target:  5'- cCGggGaccgGUCUCa--AUCGCaCGCGGGUc -3'
miRNA:   3'- aGCuuU----UAGAGgcuUAGCG-GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 29237 0.67 0.99091
Target:  5'- -aGGAcGUCUCCGGGgacacCGCCGCGaGcGUg -3'
miRNA:   3'- agCUUuUAGAGGCUUa----GCGGCGC-C-CA- -5'
14146 3' -52.5 NC_003521.1 + 43796 0.66 0.995381
Target:  5'- uUCGAAAggggggccgccauGUCgcagcagCCGggUCagccgccgccgGCCGCGGGc -3'
miRNA:   3'- -AGCUUU-------------UAGa------GGCuuAG-----------CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 45276 0.66 0.996643
Target:  5'- cUGGAGAUCauggaCCGGG-CGCCGCuGGGc -3'
miRNA:   3'- aGCUUUUAGa----GGCUUaGCGGCG-CCCa -5'
14146 3' -52.5 NC_003521.1 + 46432 0.66 0.995449
Target:  5'- gCGAGGGUaUCCGGcgggGCUGCGGGg -3'
miRNA:   3'- aGCUUUUAgAGGCUuag-CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 49736 0.7 0.942718
Target:  5'- aCGAGAcgCagcCCGccgccgccaccacGGUCGCCGCGGGa -3'
miRNA:   3'- aGCUUUuaGa--GGC-------------UUAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 59042 0.69 0.971901
Target:  5'- aCGAGGAUCgcgacuaCCGGG-CGCUGUGGGc -3'
miRNA:   3'- aGCUUUUAGa------GGCUUaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 60892 0.74 0.826124
Target:  5'- cUCGGAGAUCUUCGGcAUC-CCGCaGGGUc -3'
miRNA:   3'- -AGCUUUUAGAGGCU-UAGcGGCG-CCCA- -5'
14146 3' -52.5 NC_003521.1 + 70339 0.68 0.986819
Target:  5'- gUGAcGAUCUUCGcGAUCGCCGCGc-- -3'
miRNA:   3'- aGCUuUUAGAGGC-UUAGCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 76755 0.68 0.979102
Target:  5'- aCGAcGAcCUCCGAggcgaccGUCGCCGUGGc- -3'
miRNA:   3'- aGCUuUUaGAGGCU-------UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 82812 0.69 0.965036
Target:  5'- aCGAuuAUCacaCCGcacgcuauuacacaAAUCGCCGCGGGc -3'
miRNA:   3'- aGCUuuUAGa--GGC--------------UUAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 85370 0.66 0.996643
Target:  5'- cUCGAcgGgcugCUgCGAcUCGCCcaGCGGGUc -3'
miRNA:   3'- -AGCUuuUa---GAgGCUuAGCGG--CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 91798 0.8 0.487879
Target:  5'- cUCGAGAAUCUCCa---CGCCGUGGGg -3'
miRNA:   3'- -AGCUUUUAGAGGcuuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 93493 0.67 0.991919
Target:  5'- aCGAAGAg-UCCGAgggcgccuagcgcGUCGUgGUGGGUa -3'
miRNA:   3'- aGCUUUUagAGGCU-------------UAGCGgCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 95133 0.66 0.994262
Target:  5'- cUUGAAGAgCUCCGcGUCGUgcgagagcaggaacuCGCGGGc -3'
miRNA:   3'- -AGCUUUUaGAGGCuUAGCG---------------GCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.