miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 104957 0.67 0.993029
Target:  5'- cUCGAAGGUCgugCCGcgggggCGCCGCGa-- -3'
miRNA:   3'- -AGCUUUUAGa--GGCuua---GCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 107302 1.08 0.013109
Target:  5'- gUCGAAAAUCUCCGAAUCGCCGCGGGUu -3'
miRNA:   3'- -AGCUUUUAGAGGCUUAGCGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 114717 0.67 0.989676
Target:  5'- aCGAcgAGAUCgaccgcuggaUCCGGcaCGCCGUGGGg -3'
miRNA:   3'- aGCU--UUUAG----------AGGCUuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 119373 0.66 0.996643
Target:  5'- cCGggGAUgUCCGccgggaagaaGAUcaCGUCGUGGGUg -3'
miRNA:   3'- aGCuuUUAgAGGC----------UUA--GCGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 119883 0.74 0.834388
Target:  5'- gUCGGu--UCUCCucGUCGCCccGCGGGUg -3'
miRNA:   3'- -AGCUuuuAGAGGcuUAGCGG--CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 123475 0.67 0.989676
Target:  5'- gCGucag-CUCCGuguccGUCGCCGgCGGGg -3'
miRNA:   3'- aGCuuuuaGAGGCu----UAGCGGC-GCCCa -5'
14146 3' -52.5 NC_003521.1 + 123669 0.66 0.993929
Target:  5'- cUUGGAGGgagCCGGcgCGCUGCGGcGUg -3'
miRNA:   3'- -AGCUUUUagaGGCUuaGCGGCGCC-CA- -5'
14146 3' -52.5 NC_003521.1 + 124243 0.67 0.989676
Target:  5'- cCGAAGGg--UUGggUCGCCGCGcGGc -3'
miRNA:   3'- aGCUUUUagaGGCuuAGCGGCGC-CCa -5'
14146 3' -52.5 NC_003521.1 + 124287 0.66 0.996643
Target:  5'- cUGAcGAUCUCCaGAAagCGCgGCGaGGUg -3'
miRNA:   3'- aGCUuUUAGAGG-CUUa-GCGgCGC-CCA- -5'
14146 3' -52.5 NC_003521.1 + 125588 0.66 0.993929
Target:  5'- cUCGAcGcagauguacugcGUgUCCGuGUCGCCGCGGa- -3'
miRNA:   3'- -AGCUuU------------UAgAGGCuUAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 129192 0.71 0.917898
Target:  5'- uUUGGGuuUCgCCGGcgguucgaccucGUCGCCGCGGGg -3'
miRNA:   3'- -AGCUUuuAGaGGCU------------UAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 132315 0.67 0.99091
Target:  5'- --cAAAAUCUCCcgcgugCGCCuGCGGGUg -3'
miRNA:   3'- agcUUUUAGAGGcuua--GCGG-CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 133484 0.66 0.993929
Target:  5'- gUCGAGGAUCaccuggcgCCGc--UGCUGCGGGg -3'
miRNA:   3'- -AGCUUUUAGa-------GGCuuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 135362 0.66 0.995449
Target:  5'- gCGcc-GUCUCCGcggcgguuAUCGCCcGCGGGc -3'
miRNA:   3'- aGCuuuUAGAGGCu-------UAGCGG-CGCCCa -5'
14146 3' -52.5 NC_003521.1 + 143304 0.66 0.994733
Target:  5'- gUCGucucUCUCCGuGGUCGCCcGCGGu- -3'
miRNA:   3'- -AGCuuuuAGAGGC-UUAGCGG-CGCCca -5'
14146 3' -52.5 NC_003521.1 + 148778 0.67 0.992025
Target:  5'- cUCGGcgGUCgcgCCGAGgaGCCGCGGc- -3'
miRNA:   3'- -AGCUuuUAGa--GGCUUagCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 148843 0.66 0.996643
Target:  5'- cCGu---UCgcgCCGGAUCgGCCGcCGGGUu -3'
miRNA:   3'- aGCuuuuAGa--GGCUUAG-CGGC-GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 150659 0.67 0.988172
Target:  5'- aCGAAGGcggcUCUCCGGcggcggCGCCGCugcugcuGGGUg -3'
miRNA:   3'- aGCUUUU----AGAGGCUua----GCGGCG-------CCCA- -5'
14146 3' -52.5 NC_003521.1 + 155672 0.69 0.965993
Target:  5'- gCGGAGGUCUggaCGAuucAUCGCCGCcgaGGGa -3'
miRNA:   3'- aGCUUUUAGAg--GCU---UAGCGGCG---CCCa -5'
14146 3' -52.5 NC_003521.1 + 161122 0.67 0.99091
Target:  5'- gUCGGGAAUUgcaGGAUCaacgcgGCCGCGGGc -3'
miRNA:   3'- -AGCUUUUAGaggCUUAG------CGGCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.