Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14146 | 3' | -52.5 | NC_003521.1 | + | 164803 | 0.71 | 0.933756 |
Target: 5'- gUCGggGAcgaUC-CCGGAgCGcCCGCGGGg -3' miRNA: 3'- -AGCuuUU---AGaGGCUUaGC-GGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 165013 | 0.71 | 0.933756 |
Target: 5'- gCGAGGAgg-CCGcGAUCGCCGCGGc- -3' miRNA: 3'- aGCUUUUagaGGC-UUAGCGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 168117 | 0.72 | 0.88686 |
Target: 5'- gCGugGAUCgCCGAGgacgacagCGCCGUGGGUg -3' miRNA: 3'- aGCuuUUAGaGGCUUa-------GCGGCGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 172395 | 0.72 | 0.879283 |
Target: 5'- gUUGAGGGgcgCCGGcggagccGUCGCCGCGGGa -3' miRNA: 3'- -AGCUUUUagaGGCU-------UAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 175971 | 0.68 | 0.986819 |
Target: 5'- cCGggGGUaC-CCGAgAUCGCCGUGGa- -3' miRNA: 3'- aGCuuUUA-GaGGCU-UAGCGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 177519 | 0.66 | 0.996643 |
Target: 5'- gCGGAGAUCUCUcauacacaGAAgCGCCGCGa-- -3' miRNA: 3'- aGCUUUUAGAGG--------CUUaGCGGCGCcca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 179941 | 0.68 | 0.977032 |
Target: 5'- cCGAAGAUCUCCGAGaa-CUGCGGc- -3' miRNA: 3'- aGCUUUUAGAGGCUUagcGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 186511 | 0.72 | 0.912147 |
Target: 5'- gUCG-GGAUCUCgGGcgguGUCGCCaGCGGGg -3' miRNA: 3'- -AGCuUUUAGAGgCU----UAGCGG-CGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 189546 | 0.66 | 0.996023 |
Target: 5'- cCGAGAAaC-CCGAGUUGCugaucgaCGUGGGUa -3' miRNA: 3'- aGCUUUUaGaGGCUUAGCG-------GCGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 190755 | 0.68 | 0.977032 |
Target: 5'- cCGAAGGUCUCaCGGGacUCGCU-CGGGa -3' miRNA: 3'- aGCUUUUAGAG-GCUU--AGCGGcGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 193287 | 0.66 | 0.996083 |
Target: 5'- cCGGGAcgggCgUCgGAGUCGgCGCGGGg -3' miRNA: 3'- aGCUUUua--G-AGgCUUAGCgGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 193453 | 0.68 | 0.983389 |
Target: 5'- cUCGGGcuUCUCCGGcuUCGUCuCGGGUu -3' miRNA: 3'- -AGCUUuuAGAGGCUu-AGCGGcGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 195111 | 0.68 | 0.981439 |
Target: 5'- gCGggGGUCcUCGucaucGUCGCCGCGGu- -3' miRNA: 3'- aGCuuUUAGaGGCu----UAGCGGCGCCca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 197378 | 0.7 | 0.95557 |
Target: 5'- uUUGGAGAggCUCUGGcUCGCCGCccGGGa -3' miRNA: 3'- -AGCUUUUa-GAGGCUuAGCGGCG--CCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 200325 | 0.7 | 0.942718 |
Target: 5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3' miRNA: 3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 202988 | 0.66 | 0.996083 |
Target: 5'- uUCGAucuacAGUCUCCGGGcggcUCGCCcgccaagaCGGGUu -3' miRNA: 3'- -AGCUu----UUAGAGGCUU----AGCGGc-------GCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 215424 | 0.68 | 0.981029 |
Target: 5'- gCGAGcc-CUCCGugaagcagaGCCGCGGGUg -3' miRNA: 3'- aGCUUuuaGAGGCuuag-----CGGCGCCCA- -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 215635 | 0.7 | 0.943167 |
Target: 5'- gUGAGGAcggggCUCCGcauGGUCGCgGCGGGa -3' miRNA: 3'- aGCUUUUa----GAGGC---UUAGCGgCGCCCa -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 216657 | 0.67 | 0.988315 |
Target: 5'- gCGAAGA-CUCCGcAUCuCCGCGGuGg -3' miRNA: 3'- aGCUUUUaGAGGCuUAGcGGCGCC-Ca -5' |
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14146 | 3' | -52.5 | NC_003521.1 | + | 223939 | 0.66 | 0.994733 |
Target: 5'- cCGAGGGgg-UCGAGgcgGCCGCGGGg -3' miRNA: 3'- aGCUUUUagaGGCUUag-CGGCGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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