miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 165013 0.71 0.933756
Target:  5'- gCGAGGAgg-CCGcGAUCGCCGCGGc- -3'
miRNA:   3'- aGCUUUUagaGGC-UUAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 164803 0.71 0.933756
Target:  5'- gUCGggGAcgaUC-CCGGAgCGcCCGCGGGg -3'
miRNA:   3'- -AGCuuUU---AGaGGCUUaGC-GGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 200325 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 215635 0.7 0.943167
Target:  5'- gUGAGGAcggggCUCCGcauGGUCGCgGCGGGa -3'
miRNA:   3'- aGCUUUUa----GAGGC---UUAGCGgCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 197378 0.7 0.95557
Target:  5'- uUUGGAGAggCUCUGGcUCGCCGCccGGGa -3'
miRNA:   3'- -AGCUUUUa-GAGGCUuAGCGGCG--CCCa -5'
14146 3' -52.5 NC_003521.1 + 175971 0.68 0.986819
Target:  5'- cCGggGGUaC-CCGAgAUCGCCGUGGa- -3'
miRNA:   3'- aGCuuUUA-GaGGCU-UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 16418 0.68 0.984658
Target:  5'- aCGAGAcUCUgaugauaccgcagaCCGAAUUGuaaCCGCGGGUc -3'
miRNA:   3'- aGCUUUuAGA--------------GGCUUAGC---GGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 193453 0.68 0.983389
Target:  5'- cUCGGGcuUCUCCGGcuUCGUCuCGGGUu -3'
miRNA:   3'- -AGCUUuuAGAGGCUu-AGCGGcGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 228038 0.68 0.983389
Target:  5'- aUCGGAGAUCUgaggguaaUCGGggCGCacgCGCGGGUc -3'
miRNA:   3'- -AGCUUUUAGA--------GGCUuaGCG---GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 215424 0.68 0.981029
Target:  5'- gCGAGcc-CUCCGugaagcagaGCCGCGGGUg -3'
miRNA:   3'- aGCUUuuaGAGGCuuag-----CGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 155672 0.69 0.965993
Target:  5'- gCGGAGGUCUggaCGAuucAUCGCCGCcgaGGGa -3'
miRNA:   3'- aGCUUUUAGAg--GCU---UAGCGGCG---CCCa -5'
14146 3' -52.5 NC_003521.1 + 240646 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 49736 0.7 0.942718
Target:  5'- aCGAGAcgCagcCCGccgccgccaccacGGUCGCCGCGGGa -3'
miRNA:   3'- aGCUUUuaGa--GGC-------------UUAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 97 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 129192 0.71 0.917898
Target:  5'- uUUGGGuuUCgCCGGcgguucgaccucGUCGCCGCGGGg -3'
miRNA:   3'- -AGCUUuuAGaGGCU------------UAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 4661 0.72 0.89352
Target:  5'- aCGggGGUUUCCGAAaCGCCGCa--- -3'
miRNA:   3'- aGCuuUUAGAGGCUUaGCGGCGccca -5'
14146 3' -52.5 NC_003521.1 + 168117 0.72 0.88686
Target:  5'- gCGugGAUCgCCGAGgacgacagCGCCGUGGGUg -3'
miRNA:   3'- aGCuuUUAGaGGCUUa-------GCGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 172395 0.72 0.879283
Target:  5'- gUUGAGGGgcgCCGGcggagccGUCGCCGCGGGa -3'
miRNA:   3'- -AGCUUUUagaGGCU-------UAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 91798 0.8 0.487879
Target:  5'- cUCGAGAAUCUCCa---CGCCGUGGGg -3'
miRNA:   3'- -AGCUUUUAGAGGcuuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 124287 0.66 0.996643
Target:  5'- cUGAcGAUCUCCaGAAagCGCgGCGaGGUg -3'
miRNA:   3'- aGCUuUUAGAGG-CUUa-GCGgCGC-CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.