miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 189546 0.66 0.996023
Target:  5'- cCGAGAAaC-CCGAGUUGCugaucgaCGUGGGUa -3'
miRNA:   3'- aGCUUUUaGaGGCUUAGCG-------GCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 202988 0.66 0.996083
Target:  5'- uUCGAucuacAGUCUCCGGGcggcUCGCCcgccaagaCGGGUu -3'
miRNA:   3'- -AGCUu----UUAGAGGCUU----AGCGGc-------GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 13860 0.66 0.996482
Target:  5'- gCGggGGUCUCUGcgggcGGcgccgccauggauuUCGCCGgGGGg -3'
miRNA:   3'- aGCuuUUAGAGGC-----UU--------------AGCGGCgCCCa -5'
14146 3' -52.5 NC_003521.1 + 85370 0.66 0.996643
Target:  5'- cUCGAcgGgcugCUgCGAcUCGCCcaGCGGGUc -3'
miRNA:   3'- -AGCUuuUa---GAgGCUuAGCGG--CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 148843 0.66 0.996643
Target:  5'- cCGu---UCgcgCCGGAUCgGCCGcCGGGUu -3'
miRNA:   3'- aGCuuuuAGa--GGCUUAG-CGGC-GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 70339 0.68 0.986819
Target:  5'- gUGAcGAUCUUCGcGAUCGCCGCGc-- -3'
miRNA:   3'- aGCUuUUAGAGGC-UUAGCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 195111 0.68 0.981439
Target:  5'- gCGggGGUCcUCGucaucGUCGCCGCGGu- -3'
miRNA:   3'- aGCuuUUAGaGGCu----UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 91798 0.8 0.487879
Target:  5'- cUCGAGAAUCUCCa---CGCCGUGGGg -3'
miRNA:   3'- -AGCUUUUAGAGGcuuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 172395 0.72 0.879283
Target:  5'- gUUGAGGGgcgCCGGcggagccGUCGCCGCGGGa -3'
miRNA:   3'- -AGCUUUUagaGGCU-------UAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 168117 0.72 0.88686
Target:  5'- gCGugGAUCgCCGAGgacgacagCGCCGUGGGUg -3'
miRNA:   3'- aGCuuUUAGaGGCUUa-------GCGGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 4661 0.72 0.89352
Target:  5'- aCGggGGUUUCCGAAaCGCCGCa--- -3'
miRNA:   3'- aGCuuUUAGAGGCUUaGCGGCGccca -5'
14146 3' -52.5 NC_003521.1 + 129192 0.71 0.917898
Target:  5'- uUUGGGuuUCgCCGGcgguucgaccucGUCGCCGCGGGg -3'
miRNA:   3'- -AGCUUuuAGaGGCU------------UAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 97 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 49736 0.7 0.942718
Target:  5'- aCGAGAcgCagcCCGccgccgccaccacGGUCGCCGCGGGa -3'
miRNA:   3'- aGCUUUuaGa--GGC-------------UUAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 240646 0.7 0.942718
Target:  5'- gUCGGAcguGUUUCgggccggCGggUCGUCGCGGGg -3'
miRNA:   3'- -AGCUUu--UAGAG-------GCuuAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 82812 0.69 0.965036
Target:  5'- aCGAuuAUCacaCCGcacgcuauuacacaAAUCGCCGCGGGc -3'
miRNA:   3'- aGCUuuUAGa--GGC--------------UUAGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 59042 0.69 0.971901
Target:  5'- aCGAGGAUCgcgacuaCCGGG-CGCUGUGGGc -3'
miRNA:   3'- aGCUUUUAGa------GGCUUaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 179941 0.68 0.977032
Target:  5'- cCGAAGAUCUCCGAGaa-CUGCGGc- -3'
miRNA:   3'- aGCUUUUAGAGGCUUagcGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 190755 0.68 0.977032
Target:  5'- cCGAAGGUCUCaCGGGacUCGCU-CGGGa -3'
miRNA:   3'- aGCUUUUAGAG-GCUU--AGCGGcGCCCa -5'
14146 3' -52.5 NC_003521.1 + 76755 0.68 0.979102
Target:  5'- aCGAcGAcCUCCGAggcgaccGUCGCCGUGGc- -3'
miRNA:   3'- aGCUuUUaGAGGCU-------UAGCGGCGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.