miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 3' -52.5 NC_003521.1 + 76755 0.68 0.979102
Target:  5'- aCGAcGAcCUCCGAggcgaccGUCGCCGUGGc- -3'
miRNA:   3'- aGCUuUUaGAGGCU-------UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 13860 0.66 0.996482
Target:  5'- gCGggGGUCUCUGcgggcGGcgccgccauggauuUCGCCGgGGGg -3'
miRNA:   3'- aGCuuUUAGAGGC-----UU--------------AGCGGCgCCCa -5'
14146 3' -52.5 NC_003521.1 + 93493 0.67 0.991919
Target:  5'- aCGAAGAg-UCCGAgggcgccuagcgcGUCGUgGUGGGUa -3'
miRNA:   3'- aGCUUUUagAGGCU-------------UAGCGgCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 190755 0.68 0.977032
Target:  5'- cCGAAGGUCUCaCGGGacUCGCU-CGGGa -3'
miRNA:   3'- aGCUUUUAGAG-GCUU--AGCGGcGCCCa -5'
14146 3' -52.5 NC_003521.1 + 143304 0.66 0.994733
Target:  5'- gUCGucucUCUCCGuGGUCGCCcGCGGu- -3'
miRNA:   3'- -AGCuuuuAGAGGC-UUAGCGG-CGCCca -5'
14146 3' -52.5 NC_003521.1 + 85370 0.66 0.996643
Target:  5'- cUCGAcgGgcugCUgCGAcUCGCCcaGCGGGUc -3'
miRNA:   3'- -AGCUuuUa---GAgGCUuAGCGG--CGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 202988 0.66 0.996083
Target:  5'- uUCGAucuacAGUCUCCGGGcggcUCGCCcgccaagaCGGGUu -3'
miRNA:   3'- -AGCUu----UUAGAGGCUU----AGCGGc-------GCCCA- -5'
14146 3' -52.5 NC_003521.1 + 179941 0.68 0.977032
Target:  5'- cCGAAGAUCUCCGAGaa-CUGCGGc- -3'
miRNA:   3'- aGCUUUUAGAGGCUUagcGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 59042 0.69 0.971901
Target:  5'- aCGAGGAUCgcgacuaCCGGG-CGCUGUGGGc -3'
miRNA:   3'- aGCUUUUAGa------GGCUUaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 195111 0.68 0.981439
Target:  5'- gCGggGGUCcUCGucaucGUCGCCGCGGu- -3'
miRNA:   3'- aGCuuUUAGaGGCu----UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 114717 0.67 0.989676
Target:  5'- aCGAcgAGAUCgaccgcuggaUCCGGcaCGCCGUGGGg -3'
miRNA:   3'- aGCU--UUUAG----------AGGCUuaGCGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 215635 0.7 0.943167
Target:  5'- gUGAGGAcggggCUCCGcauGGUCGCgGCGGGa -3'
miRNA:   3'- aGCUUUUa----GAGGC---UUAGCGgCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 45276 0.66 0.996643
Target:  5'- cUGGAGAUCauggaCCGGG-CGCCGCuGGGc -3'
miRNA:   3'- aGCUUUUAGa----GGCUUaGCGGCG-CCCa -5'
14146 3' -52.5 NC_003521.1 + 177519 0.66 0.996643
Target:  5'- gCGGAGAUCUCUcauacacaGAAgCGCCGCGa-- -3'
miRNA:   3'- aGCUUUUAGAGG--------CUUaGCGGCGCcca -5'
14146 3' -52.5 NC_003521.1 + 193287 0.66 0.996083
Target:  5'- cCGGGAcgggCgUCgGAGUCGgCGCGGGg -3'
miRNA:   3'- aGCUUUua--G-AGgCUUAGCgGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 46432 0.66 0.995449
Target:  5'- gCGAGGGUaUCCGGcgggGCUGCGGGg -3'
miRNA:   3'- aGCUUUUAgAGGCUuag-CGGCGCCCa -5'
14146 3' -52.5 NC_003521.1 + 135362 0.66 0.995449
Target:  5'- gCGcc-GUCUCCGcggcgguuAUCGCCcGCGGGc -3'
miRNA:   3'- aGCuuuUAGAGGCu-------UAGCGG-CGCCCa -5'
14146 3' -52.5 NC_003521.1 + 16418 0.68 0.984658
Target:  5'- aCGAGAcUCUgaugauaccgcagaCCGAAUUGuaaCCGCGGGUc -3'
miRNA:   3'- aGCUUUuAGA--------------GGCUUAGC---GGCGCCCA- -5'
14146 3' -52.5 NC_003521.1 + 175971 0.68 0.986819
Target:  5'- cCGggGGUaC-CCGAgAUCGCCGUGGa- -3'
miRNA:   3'- aGCuuUUA-GaGGCU-UAGCGGCGCCca -5'
14146 3' -52.5 NC_003521.1 + 150659 0.67 0.988172
Target:  5'- aCGAAGGcggcUCUCCGGcggcggCGCCGCugcugcuGGGUg -3'
miRNA:   3'- aGCUUUU----AGAGGCUua----GCGGCG-------CCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.