miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14146 5' -59.4 NC_003521.1 + 147201 0.65 0.879582
Target:  5'- aGCGGCGGCGuuuuagaccuuucGCcCCAGccgGGUCCUCa -3'
miRNA:   3'- -CGUCGUCGC-------------CGcGGUCca-CUAGGAGc -5'
14146 5' -59.4 NC_003521.1 + 120494 0.65 0.879582
Target:  5'- aGCAGCAGCGGCcaccgcaugucucGaucuccuucgcCCGGGgaagGGcCCUCGg -3'
miRNA:   3'- -CGUCGUCGCCG-------------C-----------GGUCCa---CUaGGAGC- -5'
14146 5' -59.4 NC_003521.1 + 105397 0.65 0.878907
Target:  5'- --cGCgGGCGccaaaucGCGCCGGGUGAUugguucccgcccgCCUCGg -3'
miRNA:   3'- cguCG-UCGC-------CGCGGUCCACUA-------------GGAGC- -5'
14146 5' -59.4 NC_003521.1 + 151793 0.65 0.878229
Target:  5'- aGCGGCGaggaacucaccgccGUGGCGCC-GGUGGggCCcgCGg -3'
miRNA:   3'- -CGUCGU--------------CGCCGCGGuCCACUa-GGa-GC- -5'
14146 5' -59.4 NC_003521.1 + 164547 0.66 0.873431
Target:  5'- cGCAGCAGCGGCaGCgAcucu-UCCUCu -3'
miRNA:   3'- -CGUCGUCGCCG-CGgUccacuAGGAGc -5'
14146 5' -59.4 NC_003521.1 + 72995 0.66 0.873431
Target:  5'- cGCGGCGGUcGUGCCcGGgggGGUCCa-- -3'
miRNA:   3'- -CGUCGUCGcCGCGGuCCa--CUAGGagc -5'
14146 5' -59.4 NC_003521.1 + 91923 0.66 0.873431
Target:  5'- aCGGCGGCGGCGaugcGGUGGaCC-CGg -3'
miRNA:   3'- cGUCGUCGCCGCggu-CCACUaGGaGC- -5'
14146 5' -59.4 NC_003521.1 + 27296 0.66 0.873431
Target:  5'- cGCAGCAGaGGUaguagcuCCAGGccuUGAcgUCCUCGg -3'
miRNA:   3'- -CGUCGUCgCCGc------GGUCC---ACU--AGGAGC- -5'
14146 5' -59.4 NC_003521.1 + 194018 0.66 0.873431
Target:  5'- cCGGCGGCGGCGUCAuccagaccauGGaacucaUGAUCCa-- -3'
miRNA:   3'- cGUCGUCGCCGCGGU----------CC------ACUAGGagc -5'
14146 5' -59.4 NC_003521.1 + 187225 0.66 0.873431
Target:  5'- aGCAGCAGCcucaGCCAaGUGAgCUUCGa -3'
miRNA:   3'- -CGUCGUCGccg-CGGUcCACUaGGAGC- -5'
14146 5' -59.4 NC_003521.1 + 186302 0.66 0.873431
Target:  5'- gGCccCAGCGGCGCCGuGcaGAUCCUgGu -3'
miRNA:   3'- -CGucGUCGCCGCGGU-CcaCUAGGAgC- -5'
14146 5' -59.4 NC_003521.1 + 170351 0.66 0.873431
Target:  5'- gGCGGCAGCGGUGgUAcucGG-GAUCacgCUCGu -3'
miRNA:   3'- -CGUCGUCGCCGCgGU---CCaCUAG---GAGC- -5'
14146 5' -59.4 NC_003521.1 + 64220 0.66 0.872738
Target:  5'- cGCAGCAGC-GCGaggacgugcucauCCAGGUacaggaccuGAUCUUCa -3'
miRNA:   3'- -CGUCGUCGcCGC-------------GGUCCA---------CUAGGAGc -5'
14146 5' -59.4 NC_003521.1 + 161186 0.66 0.866411
Target:  5'- uGCAGCAGCagacgacgccgaGGCGCCGcGGUcg-CCcCGg -3'
miRNA:   3'- -CGUCGUCG------------CCGCGGU-CCAcuaGGaGC- -5'
14146 5' -59.4 NC_003521.1 + 52252 0.66 0.866411
Target:  5'- gGCAGCGGCaGGCGgUuguuguuGUGAUCCggagCGg -3'
miRNA:   3'- -CGUCGUCG-CCGCgGuc-----CACUAGGa---GC- -5'
14146 5' -59.4 NC_003521.1 + 169290 0.66 0.866411
Target:  5'- uCGGCGGCGG-GCUcGGUGA-CgUCGg -3'
miRNA:   3'- cGUCGUCGCCgCGGuCCACUaGgAGC- -5'
14146 5' -59.4 NC_003521.1 + 7094 0.66 0.859929
Target:  5'- cGCGGCGGCGGCguccuccuucuccagGCCgcugAGGUGGagcugcaugcguugUcCCUCGc -3'
miRNA:   3'- -CGUCGUCGCCG---------------CGG----UCCACU--------------A-GGAGC- -5'
14146 5' -59.4 NC_003521.1 + 52619 0.66 0.8592
Target:  5'- -gAGUGGCaGGa-CCGGGUGAUCCUgCGu -3'
miRNA:   3'- cgUCGUCG-CCgcGGUCCACUAGGA-GC- -5'
14146 5' -59.4 NC_003521.1 + 221349 0.66 0.8592
Target:  5'- uGCcGCuuuGCGGCGgUAGaGgaggGGUCCUCGu -3'
miRNA:   3'- -CGuCGu--CGCCGCgGUC-Ca---CUAGGAGC- -5'
14146 5' -59.4 NC_003521.1 + 47571 0.66 0.8592
Target:  5'- aCGGCgAGCGG-GCCAcGGUGGcggucggagUCCUCc -3'
miRNA:   3'- cGUCG-UCGCCgCGGU-CCACU---------AGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.