miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 3' -55.2 NC_003521.1 + 220510 0.66 0.97554
Target:  5'- --aGCAGCgugguggCCUCCUGGUGCUgcaugGCg -3'
miRNA:   3'- agcUGUCGg------GGAGGACCAUGAaca--CG- -5'
14147 3' -55.2 NC_003521.1 + 150271 0.66 0.97554
Target:  5'- gCGGcCGGCCUCUCgUgGGUGCU-GUcGCg -3'
miRNA:   3'- aGCU-GUCGGGGAGgA-CCAUGAaCA-CG- -5'
14147 3' -55.2 NC_003521.1 + 237847 0.66 0.97554
Target:  5'- gUCGGCAGCCUUUCggUGGUACcgGgagaggGCg -3'
miRNA:   3'- -AGCUGUCGGGGAGg-ACCAUGaaCa-----CG- -5'
14147 3' -55.2 NC_003521.1 + 190447 0.66 0.97554
Target:  5'- gUGugGGCCugcuaaCCUUCUGGUACcUGaGCu -3'
miRNA:   3'- aGCugUCGG------GGAGGACCAUGaACaCG- -5'
14147 3' -55.2 NC_003521.1 + 63263 0.66 0.97554
Target:  5'- uUUGACgAGUCCUUCCUcGGcgACcggGUGCa -3'
miRNA:   3'- -AGCUG-UCGGGGAGGA-CCa-UGaa-CACG- -5'
14147 3' -55.2 NC_003521.1 + 223896 0.66 0.975044
Target:  5'- aCGGCGGUCgUUCCUGGUGaugauacggugaUUGgagGCg -3'
miRNA:   3'- aGCUGUCGGgGAGGACCAUg-----------AACa--CG- -5'
14147 3' -55.2 NC_003521.1 + 24456 0.66 0.972983
Target:  5'- -aGGCAGCCCUUcugcucugCCUGGccaGCgcGUGCu -3'
miRNA:   3'- agCUGUCGGGGA--------GGACCa--UGaaCACG- -5'
14147 3' -55.2 NC_003521.1 + 39593 0.66 0.972983
Target:  5'- gUCGGCGGUCCUgcCCUGGgugGCg---GCg -3'
miRNA:   3'- -AGCUGUCGGGGa-GGACCa--UGaacaCG- -5'
14147 3' -55.2 NC_003521.1 + 139017 0.66 0.970238
Target:  5'- gCGACcGCCC--CCUGG-GCUUcGUGCg -3'
miRNA:   3'- aGCUGuCGGGgaGGACCaUGAA-CACG- -5'
14147 3' -55.2 NC_003521.1 + 118136 0.66 0.970238
Target:  5'- cCGAcCGGCCCCgcagCUgucGGUGCUgg-GCg -3'
miRNA:   3'- aGCU-GUCGGGGa---GGa--CCAUGAacaCG- -5'
14147 3' -55.2 NC_003521.1 + 98593 0.66 0.970238
Target:  5'- cCGGCAGuCCCCUCCUuuucuuucgGCUUcUGCc -3'
miRNA:   3'- aGCUGUC-GGGGAGGAcca------UGAAcACG- -5'
14147 3' -55.2 NC_003521.1 + 137277 0.66 0.970238
Target:  5'- gCGGgGGCCCCagcgaCCUGGaGCUgcggGUGg -3'
miRNA:   3'- aGCUgUCGGGGa----GGACCaUGAa---CACg -5'
14147 3' -55.2 NC_003521.1 + 149678 0.66 0.970238
Target:  5'- aUCGugGGCCCCgCCgGGaaGCUgagGUGg -3'
miRNA:   3'- -AGCugUCGGGGaGGaCCa-UGAa--CACg -5'
14147 3' -55.2 NC_003521.1 + 95278 0.66 0.967299
Target:  5'- aCGAagGGgUCCUCCUucuugcgcaGGUACUUGUaGCg -3'
miRNA:   3'- aGCUg-UCgGGGAGGA---------CCAUGAACA-CG- -5'
14147 3' -55.2 NC_003521.1 + 129378 0.66 0.967299
Target:  5'- gCGACGGUagaUgUCCaGGUGCUUGcGCu -3'
miRNA:   3'- aGCUGUCGg--GgAGGaCCAUGAACaCG- -5'
14147 3' -55.2 NC_003521.1 + 118967 0.66 0.967299
Target:  5'- -aGACAGUCCCUCCUcGGUGu------ -3'
miRNA:   3'- agCUGUCGGGGAGGA-CCAUgaacacg -5'
14147 3' -55.2 NC_003521.1 + 188057 0.66 0.96416
Target:  5'- -gGACAuCUCCaUCCUGGUuaACgaGUGCg -3'
miRNA:   3'- agCUGUcGGGG-AGGACCA--UGaaCACG- -5'
14147 3' -55.2 NC_003521.1 + 149643 0.67 0.957263
Target:  5'- cCGGCgaGGUgCUCUCCUGGUGCggGcUGCc -3'
miRNA:   3'- aGCUG--UCG-GGGAGGACCAUGaaC-ACG- -5'
14147 3' -55.2 NC_003521.1 + 60590 0.67 0.957263
Target:  5'- aUCGGCAGUUCCauccucaguuUCCUGGUGguggcCUUcUGCg -3'
miRNA:   3'- -AGCUGUCGGGG----------AGGACCAU-----GAAcACG- -5'
14147 3' -55.2 NC_003521.1 + 38703 0.67 0.957263
Target:  5'- -aGACaAGCCCgUCCcGGUACcUGcGCc -3'
miRNA:   3'- agCUG-UCGGGgAGGaCCAUGaACaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.