miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 133368 0.66 0.777788
Target:  5'- uCAGCA-CGGUccGCCGGcACAGcGCGGCg- -3'
miRNA:   3'- -GUCGUaGUCG--CGGUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 27366 0.67 0.741261
Target:  5'- gAGCAccaGGCuCCAGcCGGGgGGCCAg -3'
miRNA:   3'- gUCGUag-UCGcGGUCuGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 31430 0.67 0.737523
Target:  5'- gCAGCAggcggaugaugcgCAGCGCCAG-CAcGGCGuuagaaGCCAg -3'
miRNA:   3'- -GUCGUa------------GUCGCGGUCuGU-CCGC------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 10020 0.67 0.741261
Target:  5'- gCAGCcgCAGCaGCguGACcauugucaaGGGCGGCa- -3'
miRNA:   3'- -GUCGuaGUCG-CGguCUG---------UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 155937 0.67 0.750544
Target:  5'- aCGGCcuacUC-GCGCCacccGGAcCGGGCGGCCu -3'
miRNA:   3'- -GUCGu---AGuCGCGG----UCU-GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 117953 0.67 0.731891
Target:  5'- gAGCAUCAuCGC--GGC-GGCGGCCAg -3'
miRNA:   3'- gUCGUAGUcGCGguCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 146351 0.67 0.768816
Target:  5'- aGGCAUCAccGCGCCGuACacgGGGCGGUUc -3'
miRNA:   3'- gUCGUAGU--CGCGGUcUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 238602 0.67 0.750544
Target:  5'- cCAGCAcuagCAGgGCCuGGGCguaGGGCcGGCCGu -3'
miRNA:   3'- -GUCGUa---GUCgCGG-UCUG---UCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102776 0.67 0.750544
Target:  5'- gCAGCggCuGCGCgAuGACGcgccGGCGGCCGc -3'
miRNA:   3'- -GUCGuaGuCGCGgU-CUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109352 0.67 0.763378
Target:  5'- ---gGUCAGCGCCgagaaggacucguccAGcgGCAGGCaGGCCAg -3'
miRNA:   3'- gucgUAGUCGCGG---------------UC--UGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 206575 0.67 0.759732
Target:  5'- gGGCGaCGGgGCC-GACAGGCcccGGCUAu -3'
miRNA:   3'- gUCGUaGUCgCGGuCUGUCCG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 130027 0.67 0.741261
Target:  5'- uGGCuuUCAGCGUCauGGAgGGGCacguGGCCAc -3'
miRNA:   3'- gUCGu-AGUCGCGG--UCUgUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168660 0.67 0.750544
Target:  5'- aGGCAUgccgaCGGCGCCGGAgGucccugguGGCaGGCCGu -3'
miRNA:   3'- gUCGUA-----GUCGCGGUCUgU--------CCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113824 0.67 0.756069
Target:  5'- gGGCAccgccacgucgggCAGCGgCAGcgGGGCGGCCGg -3'
miRNA:   3'- gUCGUa------------GUCGCgGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 24223 0.67 0.750544
Target:  5'- gCAGCAcCAGCGgguugggCAG-CGGGCGGUCGg -3'
miRNA:   3'- -GUCGUaGUCGCg------GUCuGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 56916 0.67 0.768816
Target:  5'- cCGGUA-CAGCGCCGuGACGGccGUGGCUc -3'
miRNA:   3'- -GUCGUaGUCGCGGU-CUGUC--CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 129636 0.67 0.768816
Target:  5'- cCAGCccaccguccgCGGCGCCGucGCcgGGGCGGCCGc -3'
miRNA:   3'- -GUCGua--------GUCGCGGUc-UG--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 161237 0.67 0.768816
Target:  5'- gCGGCggCAGCGgCAGua--GCGGCCAg -3'
miRNA:   3'- -GUCGuaGUCGCgGUCugucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 212402 0.67 0.758818
Target:  5'- aCAGCAgCGGUaccGCCAGgcucaGCAGGCccaugauGGCCAg -3'
miRNA:   3'- -GUCGUaGUCG---CGGUC-----UGUCCG-------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 164754 0.67 0.756986
Target:  5'- gGGCAUCgcGGuCGCCGGGCGaaccauagugacgcGGCGGgCAc -3'
miRNA:   3'- gUCGUAG--UC-GCGGUCUGU--------------CCGCCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.