miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 39874 0.67 0.731891
Target:  5'- aCGGCgAUCGGgCGCCGuACAGGguguUGGCCGa -3'
miRNA:   3'- -GUCG-UAGUC-GCGGUcUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 30329 0.67 0.731891
Target:  5'- cCAGCAaCuGCGCCAG-CGagucGGCGGCg- -3'
miRNA:   3'- -GUCGUaGuCGCGGUCuGU----CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 129636 0.67 0.768816
Target:  5'- cCAGCccaccguccgCGGCGCCGucGCcgGGGCGGCCGc -3'
miRNA:   3'- -GUCGua--------GUCGCGGUc-UG--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109352 0.67 0.763378
Target:  5'- ---gGUCAGCGCCgagaaggacucguccAGcgGCAGGCaGGCCAg -3'
miRNA:   3'- gucgUAGUCGCGG---------------UC--UGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186767 0.67 0.741261
Target:  5'- gCGGCAUCggcggaGGCGgCGGugGuGGCGGCg- -3'
miRNA:   3'- -GUCGUAG------UCGCgGUCugU-CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 151810 0.67 0.741261
Target:  5'- -cGCcgUGGCGCCGGugGGGCccgcGGCa- -3'
miRNA:   3'- guCGuaGUCGCGGUCugUCCG----CCGgu -5'
14147 5' -60.2 NC_003521.1 + 18079 0.67 0.731891
Target:  5'- uGGCcgUAGC-CCAGACGGcgcgcgagaugaGCGGCCu -3'
miRNA:   3'- gUCGuaGUCGcGGUCUGUC------------CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 198368 0.67 0.72244
Target:  5'- aAGaagUAGCGCCGGACggcguuguggcGGGCGGCg- -3'
miRNA:   3'- gUCguaGUCGCGGUCUG-----------UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 142430 0.67 0.72244
Target:  5'- aCAGCAgCAGCGCCGccGAagccuCGGGC-GCCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGU--CU-----GUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 16999 0.67 0.72244
Target:  5'- aCAGCA--GGCGCCcgcGGugGcGGCGGCgCAg -3'
miRNA:   3'- -GUCGUagUCGCGG---UCugU-CCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 146351 0.67 0.768816
Target:  5'- aGGCAUCAccGCGCCGuACacgGGGCGGUUc -3'
miRNA:   3'- gUCGUAGU--CGCGGUcUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 161237 0.67 0.768816
Target:  5'- gCGGCggCAGCGgCAGua--GCGGCCAg -3'
miRNA:   3'- -GUCGuaGUCGCgGUCugucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 224011 0.67 0.731891
Target:  5'- -uGCggCAGCGgCGGGCccGGCGGUCGg -3'
miRNA:   3'- guCGuaGUCGCgGUCUGu-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 181380 0.67 0.72244
Target:  5'- aCAGCcugUAGCGCCAGACcguguccgacggAGGUGaCCAg -3'
miRNA:   3'- -GUCGua-GUCGCGGUCUG------------UCCGCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 163693 0.67 0.72244
Target:  5'- aAGag-CGGCGCCA-AC-GGCGGCCAc -3'
miRNA:   3'- gUCguaGUCGCGGUcUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 70919 0.67 0.72244
Target:  5'- gAGcCGUCAGCGCCAG-CAGG-GuCCAc -3'
miRNA:   3'- gUC-GUAGUCGCGGUCuGUCCgCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 140185 0.67 0.72244
Target:  5'- gCAGCucuUCauAGCGCUccuGGAUcuuGGCGGCCGa -3'
miRNA:   3'- -GUCGu--AG--UCGCGG---UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103653 0.67 0.741261
Target:  5'- gCAGC-UCGGCGgCGGccgcuGCGGccGCGGCCAu -3'
miRNA:   3'- -GUCGuAGUCGCgGUC-----UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 193299 0.67 0.759732
Target:  5'- uCGGaGUCGGCGCgGGGguGGUGGgCAc -3'
miRNA:   3'- -GUCgUAGUCGCGgUCUguCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 140150 0.67 0.772418
Target:  5'- uCAGCAUCAccacuaucaccauccGCaGCCGacgcaacgcGGCGGGaCGGCCGg -3'
miRNA:   3'- -GUCGUAGU---------------CG-CGGU---------CUGUCC-GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.