Results 101 - 120 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 39874 | 0.67 | 0.731891 |
Target: 5'- aCGGCgAUCGGgCGCCGuACAGGguguUGGCCGa -3' miRNA: 3'- -GUCG-UAGUC-GCGGUcUGUCC----GCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 30329 | 0.67 | 0.731891 |
Target: 5'- cCAGCAaCuGCGCCAG-CGagucGGCGGCg- -3' miRNA: 3'- -GUCGUaGuCGCGGUCuGU----CCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 224011 | 0.67 | 0.731891 |
Target: 5'- -uGCggCAGCGgCGGGCccGGCGGUCGg -3' miRNA: 3'- guCGuaGUCGCgGUCUGu-CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 181380 | 0.67 | 0.72244 |
Target: 5'- aCAGCcugUAGCGCCAGACcguguccgacggAGGUGaCCAg -3' miRNA: 3'- -GUCGua-GUCGCGGUCUG------------UCCGCcGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 172308 | 0.67 | 0.750544 |
Target: 5'- cCGGUGUCgguGGCGCCAGGCcggucGCGGCgGa -3' miRNA: 3'- -GUCGUAG---UCGCGGUCUGuc---CGCCGgU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 163693 | 0.67 | 0.72244 |
Target: 5'- aAGag-CGGCGCCA-AC-GGCGGCCAc -3' miRNA: 3'- gUCguaGUCGCGGUcUGuCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 70919 | 0.67 | 0.72244 |
Target: 5'- gAGcCGUCAGCGCCAG-CAGG-GuCCAc -3' miRNA: 3'- gUC-GUAGUCGCGGUCuGUCCgCcGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 140185 | 0.67 | 0.72244 |
Target: 5'- gCAGCucuUCauAGCGCUccuGGAUcuuGGCGGCCGa -3' miRNA: 3'- -GUCGu--AG--UCGCGG---UCUGu--CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 146351 | 0.67 | 0.768816 |
Target: 5'- aGGCAUCAccGCGCCGuACacgGGGCGGUUc -3' miRNA: 3'- gUCGUAGU--CGCGGUcUG---UCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 103653 | 0.67 | 0.741261 |
Target: 5'- gCAGC-UCGGCGgCGGccgcuGCGGccGCGGCCAu -3' miRNA: 3'- -GUCGuAGUCGCgGUC-----UGUC--CGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 140150 | 0.67 | 0.772418 |
Target: 5'- uCAGCAUCAccacuaucaccauccGCaGCCGacgcaacgcGGCGGGaCGGCCGg -3' miRNA: 3'- -GUCGUAGU---------------CG-CGGU---------CUGUCC-GCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 195168 | 0.67 | 0.772418 |
Target: 5'- aUAGCggGUguGCGCCGGACcccgcggagccggcgGcGGUGGCCGu -3' miRNA: 3'- -GUCG--UAguCGCGGUCUG---------------U-CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 98221 | 0.68 | 0.684007 |
Target: 5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3' miRNA: 3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 128017 | 0.68 | 0.712919 |
Target: 5'- gGGUcgCGGCcgucCCAGAgcgcgugcccgUAGGCGGCCAg -3' miRNA: 3'- gUCGuaGUCGc---GGUCU-----------GUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 127073 | 0.68 | 0.674281 |
Target: 5'- -cGCggCAGgGCCAccgacGAgAGGCGGCCc -3' miRNA: 3'- guCGuaGUCgCGGU-----CUgUCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 84605 | 0.68 | 0.664523 |
Target: 5'- cCAGC-UCGGCGUCGGugAcGGCcaggucguccucGGCCAu -3' miRNA: 3'- -GUCGuAGUCGCGGUCugU-CCG------------CCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 91987 | 0.68 | 0.674281 |
Target: 5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3' miRNA: 3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 167834 | 0.68 | 0.664523 |
Target: 5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3' miRNA: 3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 69760 | 0.68 | 0.712919 |
Target: 5'- uGGCAcaAGUGCaugauCGGACGGGCGaGCCGg -3' miRNA: 3'- gUCGUagUCGCG-----GUCUGUCCGC-CGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 122508 | 0.68 | 0.712919 |
Target: 5'- gGGCcaacgCGGCGgCGGGCAGGcCGGCg- -3' miRNA: 3'- gUCGua---GUCGCgGUCUGUCC-GCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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