miRNA display CGI


Results 121 - 140 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 227497 0.68 0.693695
Target:  5'- aCAGgAUUAGuUGCCAcGGCAGGCaGCCc -3'
miRNA:   3'- -GUCgUAGUC-GCGGU-CUGUCCGcCGGu -5'
14147 5' -60.2 NC_003521.1 + 91987 0.68 0.674281
Target:  5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3'
miRNA:   3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 167834 0.68 0.664523
Target:  5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3'
miRNA:   3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 169419 0.68 0.712919
Target:  5'- cCAGCAcgccgUAG-GCCAG-CAGGCGGUCc -3'
miRNA:   3'- -GUCGUa----GUCgCGGUCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 56404 0.68 0.712919
Target:  5'- gGGCAggacuccucgCAGCGCCGGuACucGCGGUCGa -3'
miRNA:   3'- gUCGUa---------GUCGCGGUC-UGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 134155 0.68 0.712919
Target:  5'- -uGCAUCucGuCGCaCAGGUAGGUGGCCAu -3'
miRNA:   3'- guCGUAGu-C-GCG-GUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 31676 0.68 0.712919
Target:  5'- gCAGC-UCGGCGUUcuccaggugaaAGugGGGCGGCg- -3'
miRNA:   3'- -GUCGuAGUCGCGG-----------UCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 142663 0.68 0.693695
Target:  5'- uCGGCG-CAGCGCCGucagcagcGAC-GGCGGCa- -3'
miRNA:   3'- -GUCGUaGUCGCGGU--------CUGuCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 31712 0.68 0.693695
Target:  5'- gCAGCAUguGCGCgugcugGGACGccGCGGCCAc -3'
miRNA:   3'- -GUCGUAguCGCGg-----UCUGUc-CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 32091 0.68 0.683037
Target:  5'- aCGGC--CAGCGCCAugcguuuGGCGGcGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGU-------CUGUC-CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 227606 0.68 0.674281
Target:  5'- aGGCuUgGGCGCCGGucggcccuccaACAcGGCGGCCc -3'
miRNA:   3'- gUCGuAgUCGCGGUC-----------UGU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 216617 0.68 0.674281
Target:  5'- gCAGCAgUCGaCGgUAGGCGGGCGcGCCGa -3'
miRNA:   3'- -GUCGU-AGUcGCgGUCUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 133161 0.68 0.674281
Target:  5'- cCAGCAgCAGC-CgGGACAccagcaguGGCGGCCu -3'
miRNA:   3'- -GUCGUaGUCGcGgUCUGU--------CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 184783 0.68 0.712919
Target:  5'- gGGCAaCGcGCGCCuGGACGcccuGGUGGCCGc -3'
miRNA:   3'- gUCGUaGU-CGCGG-UCUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 122508 0.68 0.712919
Target:  5'- gGGCcaacgCGGCGgCGGGCAGGcCGGCg- -3'
miRNA:   3'- gUCGua---GUCGCgGUCUGUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 348 0.68 0.703334
Target:  5'- aAGCGUgAGCuGCCGGA--GGCGGCg- -3'
miRNA:   3'- gUCGUAgUCG-CGGUCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 91653 0.68 0.703334
Target:  5'- uGGCGaCGcGCGCCgAGACggacgacgAGGUGGCCAc -3'
miRNA:   3'- gUCGUaGU-CGCGG-UCUG--------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113355 0.68 0.684007
Target:  5'- -cGCAucUCGGCGCU-GGCGGGCgucaacaacGGCCAg -3'
miRNA:   3'- guCGU--AGUCGCGGuCUGUCCG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 220118 0.68 0.684007
Target:  5'- --aCGUCAcGCGCCAGguugGCGGGCGGUUc -3'
miRNA:   3'- gucGUAGU-CGCGGUC----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 98221 0.68 0.684007
Target:  5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3'
miRNA:   3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.