miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 100177 0.7 0.59595
Target:  5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3'
miRNA:   3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186814 0.7 0.590096
Target:  5'- aCGGCGUgGGCGaCCAGAUcugacgguccugcgaAuGGCGGCCc -3'
miRNA:   3'- -GUCGUAgUCGC-GGUCUG---------------U-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 129126 0.7 0.586199
Target:  5'- -cGCG-CAGguaCGUCAGGCAGGCGGCg- -3'
miRNA:   3'- guCGUaGUC---GCGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 74693 0.7 0.586199
Target:  5'- gCAGCAgcgacggCGGCGCCGcGGCA-GCGGCUc -3'
miRNA:   3'- -GUCGUa------GUCGCGGU-CUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 192457 0.7 0.576478
Target:  5'- uGGCggCGGCGCCGGuuucCAGGaCGGCg- -3'
miRNA:   3'- gUCGuaGUCGCGGUCu---GUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122659 0.7 0.59595
Target:  5'- gGGCGUCGucuGCGgCGGugGGGUGGCg- -3'
miRNA:   3'- gUCGUAGU---CGCgGUCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 75541 0.7 0.576478
Target:  5'- uCAGUucagCGGCGCCGG-C-GGCGGCUAc -3'
miRNA:   3'- -GUCGua--GUCGCGGUCuGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 212663 0.7 0.576478
Target:  5'- gGGUAUCAGCaugccCCAGACGGGCaGCg- -3'
miRNA:   3'- gUCGUAGUCGc----GGUCUGUCCGcCGgu -5'
14147 5' -60.2 NC_003521.1 + 127376 0.7 0.557151
Target:  5'- gCGGCA--GGUGCguGAUgaaGGGCGGCCAc -3'
miRNA:   3'- -GUCGUagUCGCGguCUG---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27457 0.69 0.654741
Target:  5'- uCGGcCGUgAGCGCCAGGCuGGCcaGGuCCGu -3'
miRNA:   3'- -GUC-GUAgUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 68666 0.69 0.635135
Target:  5'- cCAGCcgCAGaGCguGGaagAGGCGGCCAu -3'
miRNA:   3'- -GUCGuaGUCgCGguCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 85212 0.69 0.635135
Target:  5'- -uGCGUCAcccggcgccGCGCCGGACAGagacauGgGGCCGg -3'
miRNA:   3'- guCGUAGU---------CGCGGUCUGUC------CgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110637 0.69 0.635135
Target:  5'- uCGGCAUCucgccgGGCGCCGGcACGgucacggcccGGuCGGCCAg -3'
miRNA:   3'- -GUCGUAG------UCGCGGUC-UGU----------CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 17052 0.69 0.644943
Target:  5'- gCAGCAccagCAGCGCC-GACGauaccgcuGGCGGCg- -3'
miRNA:   3'- -GUCGUa---GUCGCGGuCUGU--------CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 138588 0.69 0.644943
Target:  5'- gCGGCAUCu-CGCCGGACaccauguacgAGGUGuGCCAg -3'
miRNA:   3'- -GUCGUAGucGCGGUCUG----------UCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 43476 0.69 0.644943
Target:  5'- cCAGCG-CGGCgGCCGugcuGGCcgcGGCGGCCAa -3'
miRNA:   3'- -GUCGUaGUCG-CGGU----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 215048 0.69 0.651803
Target:  5'- -uGCGaCAGgGCCAGGCAGGCGauuaggacgcugauGCCc -3'
miRNA:   3'- guCGUaGUCgCGGUCUGUCCGC--------------CGGu -5'
14147 5' -60.2 NC_003521.1 + 110418 0.69 0.635135
Target:  5'- uCAGCGUgAGCGUgAGaACGGaGCGGCg- -3'
miRNA:   3'- -GUCGUAgUCGCGgUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 226877 0.69 0.654741
Target:  5'- cCAGCGagGGCaGCUgcggGGGCAccacGGCGGCCAg -3'
miRNA:   3'- -GUCGUagUCG-CGG----UCUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.