miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110418 0.69 0.635135
Target:  5'- uCAGCGUgAGCGUgAGaACGGaGCGGCg- -3'
miRNA:   3'- -GUCGUAgUCGCGgUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 110637 0.69 0.635135
Target:  5'- uCGGCAUCucgccgGGCGCCGGcACGgucacggcccGGuCGGCCAg -3'
miRNA:   3'- -GUCGUAG------UCGCGGUC-UGU----------CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 17052 0.69 0.644943
Target:  5'- gCAGCAccagCAGCGCC-GACGauaccgcuGGCGGCg- -3'
miRNA:   3'- -GUCGUa---GUCGCGGuCUGU--------CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 181984 0.69 0.615519
Target:  5'- gGGCAUCcGCGCCAGuaacguCAcGGCcGCCAc -3'
miRNA:   3'- gUCGUAGuCGCGGUCu-----GU-CCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 226877 0.69 0.654741
Target:  5'- cCAGCGagGGCaGCUgcggGGGCAccacGGCGGCCAg -3'
miRNA:   3'- -GUCGUagUCG-CGG----UCUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27457 0.69 0.654741
Target:  5'- uCGGcCGUgAGCGCCAGGCuGGCcaGGuCCGu -3'
miRNA:   3'- -GUC-GUAgUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 215048 0.69 0.651803
Target:  5'- -uGCGaCAGgGCCAGGCAGGCGauuaggacgcugauGCCc -3'
miRNA:   3'- guCGUaGUCgCGGUCUGUCCGC--------------CGGu -5'
14147 5' -60.2 NC_003521.1 + 43476 0.69 0.644943
Target:  5'- cCAGCG-CGGCgGCCGugcuGGCcgcGGCGGCCAa -3'
miRNA:   3'- -GUCGUaGUCG-CGGU----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 85212 0.69 0.635135
Target:  5'- -uGCGUCAcccggcgccGCGCCGGACAGagacauGgGGCCGg -3'
miRNA:   3'- guCGUAGU---------CGCGGUCUGUC------CgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 68666 0.69 0.635135
Target:  5'- cCAGCcgCAGaGCguGGaagAGGCGGCCAu -3'
miRNA:   3'- -GUCGuaGUCgCGguCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 237149 0.69 0.604747
Target:  5'- uCAGCAUCcgacgagggucccGGcCGCCgAGGCAgacggcGGCGGCCGu -3'
miRNA:   3'- -GUCGUAG-------------UC-GCGG-UCUGU------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 36002 0.69 0.625324
Target:  5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 239545 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 79753 0.69 0.635135
Target:  5'- -cGaCAUCAGCGCCGGGCcGGUgaGGaCCGg -3'
miRNA:   3'- guC-GUAGUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 111090 0.69 0.605725
Target:  5'- aCGGCGcggacgcgcUCGGCGUC-GACGGGCcgcGGCCGg -3'
miRNA:   3'- -GUCGU---------AGUCGCGGuCUGUCCG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 184030 0.69 0.605725
Target:  5'- -cGCG-CGaCGCCGGuuGGGCGGCCAu -3'
miRNA:   3'- guCGUaGUcGCGGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 125408 0.69 0.615519
Target:  5'- -cGCcgCGGCGCUgaguccggAGGCcguGGCGGCCGc -3'
miRNA:   3'- guCGuaGUCGCGG--------UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 126310 0.69 0.605725
Target:  5'- -cGUggCGGCGgUGGGCAcGGCGGCCAc -3'
miRNA:   3'- guCGuaGUCGCgGUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 138588 0.69 0.644943
Target:  5'- gCGGCAUCu-CGCCGGACaccauguacgAGGUGuGCCAg -3'
miRNA:   3'- -GUCGUAGucGCGGUCUG----------UCCGC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.