miRNA display CGI


Results 101 - 120 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 85212 0.69 0.635135
Target:  5'- -uGCGUCAcccggcgccGCGCCGGACAGagacauGgGGCCGg -3'
miRNA:   3'- guCGUAGU---------CGCGGUCUGUC------CgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 151312 0.69 0.615519
Target:  5'- -cGCGcaaGGCgGCCAGGCGGGUGGCg- -3'
miRNA:   3'- guCGUag-UCG-CGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 163206 0.69 0.615519
Target:  5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 145871 0.69 0.615519
Target:  5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 36002 0.69 0.625324
Target:  5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 239545 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 39588 0.69 0.634154
Target:  5'- cCGGCGUCGGCGguccugcCCuGGguGGCGGCg- -3'
miRNA:   3'- -GUCGUAGUCGC-------GGuCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 79753 0.69 0.635135
Target:  5'- -cGaCAUCAGCGCCGGGCcGGUgaGGaCCGg -3'
miRNA:   3'- guC-GUAGUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 68666 0.69 0.635135
Target:  5'- cCAGCcgCAGaGCguGGaagAGGCGGCCAu -3'
miRNA:   3'- -GUCGuaGUCgCGguCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 31676 0.68 0.712919
Target:  5'- gCAGC-UCGGCGUUcuccaggugaaAGugGGGCGGCg- -3'
miRNA:   3'- -GUCGuAGUCGCGG-----------UCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 169419 0.68 0.712919
Target:  5'- cCAGCAcgccgUAG-GCCAG-CAGGCGGUCc -3'
miRNA:   3'- -GUCGUa----GUCgCGGUCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 56404 0.68 0.712919
Target:  5'- gGGCAggacuccucgCAGCGCCGGuACucGCGGUCGa -3'
miRNA:   3'- gUCGUa---------GUCGCGGUC-UGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 134155 0.68 0.712919
Target:  5'- -uGCAUCucGuCGCaCAGGUAGGUGGCCAu -3'
miRNA:   3'- guCGUAGu-C-GCG-GUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 30095 0.68 0.703334
Target:  5'- aCGGUAgCAGCGCCgaGGGCuGGuuGCCAg -3'
miRNA:   3'- -GUCGUaGUCGCGG--UCUGuCCgcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 167834 0.68 0.664523
Target:  5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3'
miRNA:   3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102336 0.68 0.664523
Target:  5'- -cGCGUgGGCGCCgacgccGGGguGGCGGCa- -3'
miRNA:   3'- guCGUAgUCGCGG------UCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 133161 0.68 0.674281
Target:  5'- cCAGCAgCAGC-CgGGACAccagcaguGGCGGCCu -3'
miRNA:   3'- -GUCGUaGUCGcGgUCUGU--------CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 142663 0.68 0.693695
Target:  5'- uCGGCG-CAGCGCCGucagcagcGAC-GGCGGCa- -3'
miRNA:   3'- -GUCGUaGUCGCGGU--------CUGuCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 31712 0.68 0.693695
Target:  5'- gCAGCAUguGCGCgugcugGGACGccGCGGCCAc -3'
miRNA:   3'- -GUCGUAguCGCGg-----UCUGUc-CGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.