miRNA display CGI


Results 41 - 60 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 123557 0.71 0.509754
Target:  5'- gGGCAggugCAGCGCCAGGCAGuCGuGCa- -3'
miRNA:   3'- gUCGUa---GUCGCGGUCUGUCcGC-CGgu -5'
14147 5' -60.2 NC_003521.1 + 109340 0.71 0.519109
Target:  5'- aGGCggCAGCaGCCGGcGCAGGaGGCCGa -3'
miRNA:   3'- gUCGuaGUCG-CGGUC-UGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 76365 0.71 0.519109
Target:  5'- gCGGCAgCGGCGaCCGuGACGGccGCGGCCGc -3'
miRNA:   3'- -GUCGUaGUCGC-GGU-CUGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 201378 0.71 0.519109
Target:  5'- gCGGCccUCGGCGCCGGGCu--CGGCCGg -3'
miRNA:   3'- -GUCGu-AGUCGCGGUCUGuccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 127760 0.71 0.52853
Target:  5'- gAGCcgCAGCGUCuccucguagucGGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGG-----------UCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 167150 0.71 0.537063
Target:  5'- gCAGCGccuUgGGCGCCucGGGCgucuuggAGGCGGCCGc -3'
miRNA:   3'- -GUCGU---AgUCGCGG--UCUG-------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 74185 0.71 0.538015
Target:  5'- -cGCcgCGGCGCCcGGCGcGCGGCCc -3'
miRNA:   3'- guCGuaGUCGCGGuCUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 127376 0.7 0.557151
Target:  5'- gCGGCA--GGUGCguGAUgaaGGGCGGCCAc -3'
miRNA:   3'- -GUCGUagUCGCGguCUG---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 137510 0.7 0.565827
Target:  5'- -cGCGUCAGCGCCuGcuggaguaccggcGCGuGGUGGCCu -3'
miRNA:   3'- guCGUAGUCGCGGuC-------------UGU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 98878 0.7 0.566793
Target:  5'- cCAGCAggUgGGCGCCcacgcgcugcacGGuCAGGCGGCUg -3'
miRNA:   3'- -GUCGU--AgUCGCGG------------UCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102321 0.7 0.566793
Target:  5'- cCAGCGggcccgugaugaUCAGCuGgUAGACGGGCGGCa- -3'
miRNA:   3'- -GUCGU------------AGUCG-CgGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 103335 0.7 0.576478
Target:  5'- -cGCGcCAGCGCCGuGCGGuaGGCCAg -3'
miRNA:   3'- guCGUaGUCGCGGUcUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 75541 0.7 0.576478
Target:  5'- uCAGUucagCGGCGCCGG-C-GGCGGCUAc -3'
miRNA:   3'- -GUCGua--GUCGCGGUCuGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 212663 0.7 0.576478
Target:  5'- gGGUAUCAGCaugccCCAGACGGGCaGCg- -3'
miRNA:   3'- gUCGUAGUCGc----GGUCUGUCCGcCGgu -5'
14147 5' -60.2 NC_003521.1 + 192457 0.7 0.576478
Target:  5'- uGGCggCGGCGCCGGuuucCAGGaCGGCg- -3'
miRNA:   3'- gUCGuaGUCGCGGUCu---GUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 28060 0.7 0.580362
Target:  5'- aCGGCAUCgucaccuucaugagcAGCGCCAcGuuGGUGGCCAc -3'
miRNA:   3'- -GUCGUAG---------------UCGCGGUcUguCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 129126 0.7 0.586199
Target:  5'- -cGCG-CAGguaCGUCAGGCAGGCGGCg- -3'
miRNA:   3'- guCGUaGUC---GCGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 214022 0.7 0.586199
Target:  5'- aCGGCGcUCaggguGGCGUUAGACcGGUGGCCGg -3'
miRNA:   3'- -GUCGU-AG-----UCGCGGUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 74693 0.7 0.586199
Target:  5'- gCAGCAgcgacggCGGCGCCGcGGCA-GCGGCUc -3'
miRNA:   3'- -GUCGUa------GUCGCGGU-CUGUcCGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.