miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 186814 0.7 0.590096
Target:  5'- aCGGCGUgGGCGaCCAGAUcugacgguccugcgaAuGGCGGCCc -3'
miRNA:   3'- -GUCGUAgUCGC-GGUCUG---------------U-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 122737 0.7 0.593021
Target:  5'- gGGCGaCGGCGCCGccgauggcuGACAccgggcacggggauGGCGGCCGa -3'
miRNA:   3'- gUCGUaGUCGCGGU---------CUGU--------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 43417 0.7 0.594973
Target:  5'- uCGGCGUCGugGCCAGACAcccagucccgggcGGCGaGCCAg -3'
miRNA:   3'- -GUCGUAGUcgCGGUCUGU-------------CCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 118917 0.7 0.59595
Target:  5'- --uCGUCGGCGCCGcGGCguGGGCGGCg- -3'
miRNA:   3'- gucGUAGUCGCGGU-CUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 222762 0.7 0.59595
Target:  5'- aCGGCcaCGGCGUCGGugGGGuCGGCgCAg -3'
miRNA:   3'- -GUCGuaGUCGCGGUCugUCC-GCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 121777 0.7 0.59595
Target:  5'- uGGUGUCGGC-CaCGGGCAGGUGGCg- -3'
miRNA:   3'- gUCGUAGUCGcG-GUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 100177 0.7 0.59595
Target:  5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3'
miRNA:   3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123204 0.7 0.59595
Target:  5'- -cGCAUaCGGCGCCggguaGGACggGGGCGGCg- -3'
miRNA:   3'- guCGUA-GUCGCGG-----UCUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122659 0.7 0.59595
Target:  5'- gGGCGUCGucuGCGgCGGugGGGUGGCg- -3'
miRNA:   3'- gUCGUAGU---CGCgGUCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 237149 0.69 0.604747
Target:  5'- uCAGCAUCcgacgagggucccGGcCGCCgAGGCAgacggcGGCGGCCGu -3'
miRNA:   3'- -GUCGUAG-------------UC-GCGG-UCUGU------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 111090 0.69 0.605725
Target:  5'- aCGGCGcggacgcgcUCGGCGUC-GACGGGCcgcGGCCGg -3'
miRNA:   3'- -GUCGU---------AGUCGCGGuCUGUCCG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 91939 0.69 0.605725
Target:  5'- uCGGCGUCGGCcacggccgagGCCAGGCuGGCGuaGCUg -3'
miRNA:   3'- -GUCGUAGUCG----------CGGUCUGuCCGC--CGGu -5'
14147 5' -60.2 NC_003521.1 + 154479 0.69 0.605725
Target:  5'- cCGGCAccgcCGGCGCCGGcaagaccuccaGCAuccaggugcuGGCGGCCAa -3'
miRNA:   3'- -GUCGUa---GUCGCGGUC-----------UGU----------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 213728 0.69 0.605725
Target:  5'- cCAGCcagaCGGCGCCgcagaAGGCcgugguGGCGGCCAc -3'
miRNA:   3'- -GUCGua--GUCGCGG-----UCUGu-----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 184030 0.69 0.605725
Target:  5'- -cGCG-CGaCGCCGGuuGGGCGGCCAu -3'
miRNA:   3'- guCGUaGUcGCGGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 126310 0.69 0.605725
Target:  5'- -cGUggCGGCGgUGGGCAcGGCGGCCAc -3'
miRNA:   3'- guCGuaGUCGCgGUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123349 0.69 0.61258
Target:  5'- cCAGCGccgCGGCcguggccuccgacaGCCGcaccGACAGGCGGCUAg -3'
miRNA:   3'- -GUCGUa--GUCG--------------CGGU----CUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 145871 0.69 0.615519
Target:  5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 163206 0.69 0.615519
Target:  5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 115376 0.69 0.615519
Target:  5'- uGGC--CAGgGCCGGcaugugcagggcGCGGGCGGCCGc -3'
miRNA:   3'- gUCGuaGUCgCGGUC------------UGUCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.