miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 115376 0.69 0.615519
Target:  5'- uGGC--CAGgGCCGGcaugugcagggcGCGGGCGGCCGc -3'
miRNA:   3'- gUCGuaGUCgCGGUC------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 181984 0.69 0.615519
Target:  5'- gGGCAUCcGCGCCAGuaacguCAcGGCcGCCAc -3'
miRNA:   3'- gUCGUAGuCGCGGUCu-----GU-CCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 163206 0.69 0.615519
Target:  5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 104261 0.69 0.615519
Target:  5'- gCAGCggCAGCuGCCAGuC-GGCGGCgAa -3'
miRNA:   3'- -GUCGuaGUCG-CGGUCuGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 125408 0.69 0.615519
Target:  5'- -cGCcgCGGCGCUgaguccggAGGCcguGGCGGCCGc -3'
miRNA:   3'- guCGuaGUCGCGG--------UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 145871 0.69 0.615519
Target:  5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 14732 0.69 0.625324
Target:  5'- uGGUAUCuguuGgGCguGACGGGCcGGCCGc -3'
miRNA:   3'- gUCGUAGu---CgCGguCUGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 7820 0.69 0.625324
Target:  5'- aCGGCGUCaaggccauccGGCGCCAGAagacgaggGGGUGGCgGa -3'
miRNA:   3'- -GUCGUAG----------UCGCGGUCUg-------UCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 39318 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 36002 0.69 0.625324
Target:  5'- uCAGCGaCGGCGaCGGAgGuGGCGGCCc -3'
miRNA:   3'- -GUCGUaGUCGCgGUCUgU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 239545 0.69 0.625324
Target:  5'- --uCGUCGGCGUC--GCGGGCGGCUAg -3'
miRNA:   3'- gucGUAGUCGCGGucUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 96614 0.69 0.628268
Target:  5'- aGGCGUCGGCgcacugcugcagcuuGCCGuucuccagcgcgcGGCAGGCGGCg- -3'
miRNA:   3'- gUCGUAGUCG---------------CGGU-------------CUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 13851 0.69 0.634154
Target:  5'- uGGC-UCGGCGCgGGggucucuGCGGGCGGCg- -3'
miRNA:   3'- gUCGuAGUCGCGgUC-------UGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 39588 0.69 0.634154
Target:  5'- cCGGCGUCGGCGguccugcCCuGGguGGCGGCg- -3'
miRNA:   3'- -GUCGUAGUCGC-------GGuCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 68666 0.69 0.635135
Target:  5'- cCAGCcgCAGaGCguGGaagAGGCGGCCAu -3'
miRNA:   3'- -GUCGuaGUCgCGguCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 79753 0.69 0.635135
Target:  5'- -cGaCAUCAGCGCCGGGCcGGUgaGGaCCGg -3'
miRNA:   3'- guC-GUAGUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 85212 0.69 0.635135
Target:  5'- -uGCGUCAcccggcgccGCGCCGGACAGagacauGgGGCCGg -3'
miRNA:   3'- guCGUAGU---------CGCGGUCUGUC------CgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110418 0.69 0.635135
Target:  5'- uCAGCGUgAGCGUgAGaACGGaGCGGCg- -3'
miRNA:   3'- -GUCGUAgUCGCGgUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 110637 0.69 0.635135
Target:  5'- uCGGCAUCucgccgGGCGCCGGcACGgucacggcccGGuCGGCCAg -3'
miRNA:   3'- -GUCGUAG------UCGCGGUC-UGU----------CC-GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.