miRNA display CGI


Results 101 - 120 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 43476 0.69 0.644943
Target:  5'- cCAGCG-CGGCgGCCGugcuGGCcgcGGCGGCCAa -3'
miRNA:   3'- -GUCGUaGUCG-CGGU----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 138588 0.69 0.644943
Target:  5'- gCGGCAUCu-CGCCGGACaccauguacgAGGUGuGCCAg -3'
miRNA:   3'- -GUCGUAGucGCGGUCUG----------UCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 59506 0.69 0.644943
Target:  5'- cCAGa--CGGCGCCcuGGcccGCGGGCGGCCu -3'
miRNA:   3'- -GUCguaGUCGCGG--UC---UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 169449 0.69 0.644943
Target:  5'- aCGGCGUCGGCGgCGG-CGGGUucgucGCCAg -3'
miRNA:   3'- -GUCGUAGUCGCgGUCuGUCCGc----CGGU- -5'
14147 5' -60.2 NC_003521.1 + 17052 0.69 0.644943
Target:  5'- gCAGCAccagCAGCGCC-GACGauaccgcuGGCGGCg- -3'
miRNA:   3'- -GUCGUa---GUCGCGGuCUGU--------CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 215048 0.69 0.651803
Target:  5'- -uGCGaCAGgGCCAGGCAGGCGauuaggacgcugauGCCc -3'
miRNA:   3'- guCGUaGUCgCGGUCUGUCCGC--------------CGGu -5'
14147 5' -60.2 NC_003521.1 + 27457 0.69 0.654741
Target:  5'- uCGGcCGUgAGCGCCAGGCuGGCcaGGuCCGu -3'
miRNA:   3'- -GUC-GUAgUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 226877 0.69 0.654741
Target:  5'- cCAGCGagGGCaGCUgcggGGGCAccacGGCGGCCAg -3'
miRNA:   3'- -GUCGUagUCG-CGG----UCUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 196974 0.69 0.654741
Target:  5'- cCGGCcggGGCGCCuguGACGGGCccgcGGCCGg -3'
miRNA:   3'- -GUCGuagUCGCGGu--CUGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 128405 0.69 0.654741
Target:  5'- gAGCG--GGCGUCGGuccgaaAGGCGGCCGg -3'
miRNA:   3'- gUCGUagUCGCGGUCug----UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 167834 0.68 0.664523
Target:  5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3'
miRNA:   3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102336 0.68 0.664523
Target:  5'- -cGCGUgGGCGCCgacgccGGGguGGCGGCa- -3'
miRNA:   3'- guCGUAgUCGCGG------UCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 84605 0.68 0.664523
Target:  5'- cCAGC-UCGGCGUCGGugAcGGCcaggucguccucGGCCAu -3'
miRNA:   3'- -GUCGuAGUCGCGGUCugU-CCG------------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 91987 0.68 0.674281
Target:  5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3'
miRNA:   3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 127073 0.68 0.674281
Target:  5'- -cGCggCAGgGCCAccgacGAgAGGCGGCCc -3'
miRNA:   3'- guCGuaGUCgCGGU-----CUgUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 227606 0.68 0.674281
Target:  5'- aGGCuUgGGCGCCGGucggcccuccaACAcGGCGGCCc -3'
miRNA:   3'- gUCGuAgUCGCGGUC-----------UGU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 216617 0.68 0.674281
Target:  5'- gCAGCAgUCGaCGgUAGGCGGGCGcGCCGa -3'
miRNA:   3'- -GUCGU-AGUcGCgGUCUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 133161 0.68 0.674281
Target:  5'- cCAGCAgCAGC-CgGGACAccagcaguGGCGGCCu -3'
miRNA:   3'- -GUCGUaGUCGcGgUCUGU--------CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 32091 0.68 0.683037
Target:  5'- aCGGC--CAGCGCCAugcguuuGGCGGcGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGU-------CUGUC-CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 98221 0.68 0.684007
Target:  5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3'
miRNA:   3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.