miRNA display CGI


Results 141 - 160 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 70919 0.67 0.72244
Target:  5'- gAGcCGUCAGCGCCAG-CAGG-GuCCAc -3'
miRNA:   3'- gUC-GUAGUCGCGGUCuGUCCgCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 163693 0.67 0.72244
Target:  5'- aAGag-CGGCGCCA-AC-GGCGGCCAc -3'
miRNA:   3'- gUCguaGUCGCGGUcUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 181380 0.67 0.72244
Target:  5'- aCAGCcugUAGCGCCAGACcguguccgacggAGGUGaCCAg -3'
miRNA:   3'- -GUCGua-GUCGCGGUCUG------------UCCGCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 140185 0.67 0.72244
Target:  5'- gCAGCucuUCauAGCGCUccuGGAUcuuGGCGGCCGa -3'
miRNA:   3'- -GUCGu--AG--UCGCGG---UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 142430 0.67 0.72244
Target:  5'- aCAGCAgCAGCGCCGccGAagccuCGGGC-GCCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGU--CU-----GUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 198368 0.67 0.72244
Target:  5'- aAGaagUAGCGCCGGACggcguuguggcGGGCGGCg- -3'
miRNA:   3'- gUCguaGUCGCGGUCUG-----------UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 16999 0.67 0.72244
Target:  5'- aCAGCA--GGCGCCcgcGGugGcGGCGGCgCAg -3'
miRNA:   3'- -GUCGUagUCGCGG---UCugU-CCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 39874 0.67 0.731891
Target:  5'- aCGGCgAUCGGgCGCCGuACAGGguguUGGCCGa -3'
miRNA:   3'- -GUCG-UAGUC-GCGGUcUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 59645 0.67 0.731891
Target:  5'- aGGCGUUGGUGCggCAGACGcuGGCGcGCCu -3'
miRNA:   3'- gUCGUAGUCGCG--GUCUGU--CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 18079 0.67 0.731891
Target:  5'- uGGCcgUAGC-CCAGACGGcgcgcgagaugaGCGGCCu -3'
miRNA:   3'- gUCGuaGUCGcGGUCUGUC------------CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 110987 0.67 0.731891
Target:  5'- gGGCA-CGGCcacgggccCCAGcaGCAGGCGGCCc -3'
miRNA:   3'- gUCGUaGUCGc-------GGUC--UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 30329 0.67 0.731891
Target:  5'- cCAGCAaCuGCGCCAG-CGagucGGCGGCg- -3'
miRNA:   3'- -GUCGUaGuCGCGGUCuGU----CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 59169 0.67 0.731891
Target:  5'- gCGGCA-CGGCGCC--GCGGGCaGUCAg -3'
miRNA:   3'- -GUCGUaGUCGCGGucUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 224011 0.67 0.731891
Target:  5'- -uGCggCAGCGgCGGGCccGGCGGUCGg -3'
miRNA:   3'- guCGuaGUCGCgGUCUGu-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 117953 0.67 0.731891
Target:  5'- gAGCAUCAuCGC--GGC-GGCGGCCAg -3'
miRNA:   3'- gUCGUAGUcGCGguCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 180384 0.67 0.735649
Target:  5'- uGGUAcUgGGCGCCGGaguacugcuggugguGCuGGCGGCCGc -3'
miRNA:   3'- gUCGU-AgUCGCGGUC---------------UGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 31430 0.67 0.737523
Target:  5'- gCAGCAggcggaugaugcgCAGCGCCAG-CAcGGCGuuagaaGCCAg -3'
miRNA:   3'- -GUCGUa------------GUCGCGGUCuGU-CCGC------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 77409 0.67 0.741261
Target:  5'- aGGCAgCGGCaGCCGacGACGGGgccaCGGCCGa -3'
miRNA:   3'- gUCGUaGUCG-CGGU--CUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186605 0.67 0.741261
Target:  5'- cCGGCAgUCGGUacuGCCGGACAc-CGGCCAg -3'
miRNA:   3'- -GUCGU-AGUCG---CGGUCUGUccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 232511 0.67 0.741261
Target:  5'- aCGGgGUCaAGCGCUGGACuucGGGC-GCCAg -3'
miRNA:   3'- -GUCgUAG-UCGCGGUCUG---UCCGcCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.