miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 172308 0.67 0.750544
Target:  5'- cCGGUGUCgguGGCGCCAGGCcggucGCGGCgGa -3'
miRNA:   3'- -GUCGUAG---UCGCGGUCUGuc---CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 165047 0.67 0.750544
Target:  5'- gCGGCGUCuGCaCCuGG-AGGCGGCCu -3'
miRNA:   3'- -GUCGUAGuCGcGGuCUgUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 155937 0.67 0.750544
Target:  5'- aCGGCcuacUC-GCGCCacccGGAcCGGGCGGCCu -3'
miRNA:   3'- -GUCGu---AGuCGCGG----UCU-GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 38375 0.67 0.750544
Target:  5'- cCAGCAcuagCAGgGCCuGGGCguaGGGCcGGCCGu -3'
miRNA:   3'- -GUCGUa---GUCgCGG-UCUG---UCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 226845 0.67 0.74962
Target:  5'- -cGCcgCcGCGCCGGGCAGGCccaucagGGCg- -3'
miRNA:   3'- guCGuaGuCGCGGUCUGUCCG-------CCGgu -5'
14147 5' -60.2 NC_003521.1 + 186767 0.67 0.741261
Target:  5'- gCGGCAUCggcggaGGCGgCGGugGuGGCGGCg- -3'
miRNA:   3'- -GUCGUAG------UCGCgGUCugU-CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 232511 0.67 0.741261
Target:  5'- aCGGgGUCaAGCGCUGGACuucGGGC-GCCAg -3'
miRNA:   3'- -GUCgUAG-UCGCGGUCUG---UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 186605 0.67 0.741261
Target:  5'- cCGGCAgUCGGUacuGCCGGACAc-CGGCCAg -3'
miRNA:   3'- -GUCGU-AGUCG---CGGUCUGUccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 77409 0.67 0.741261
Target:  5'- aGGCAgCGGCaGCCGacGACGGGgccaCGGCCGa -3'
miRNA:   3'- gUCGUaGUCG-CGGU--CUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 10020 0.67 0.741261
Target:  5'- gCAGCcgCAGCaGCguGACcauugucaaGGGCGGCa- -3'
miRNA:   3'- -GUCGuaGUCG-CGguCUG---------UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 130027 0.67 0.741261
Target:  5'- uGGCuuUCAGCGUCauGGAgGGGCacguGGCCAc -3'
miRNA:   3'- gUCGu-AGUCGCGG--UCUgUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103653 0.67 0.741261
Target:  5'- gCAGC-UCGGCGgCGGccgcuGCGGccGCGGCCAu -3'
miRNA:   3'- -GUCGuAGUCGCgGUC-----UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 151810 0.67 0.741261
Target:  5'- -cGCcgUGGCGCCGGugGGGCccgcGGCa- -3'
miRNA:   3'- guCGuaGUCGCGGUCugUCCG----CCGgu -5'
14147 5' -60.2 NC_003521.1 + 113947 0.67 0.741261
Target:  5'- uCGGCGUCgacacggaggaGGCagaCAGacgGCAGGCGGCCGg -3'
miRNA:   3'- -GUCGUAG-----------UCGcg-GUC---UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 27366 0.67 0.741261
Target:  5'- gAGCAccaGGCuCCAGcCGGGgGGCCAg -3'
miRNA:   3'- gUCGUag-UCGcGGUCuGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 31430 0.67 0.737523
Target:  5'- gCAGCAggcggaugaugcgCAGCGCCAG-CAcGGCGuuagaaGCCAg -3'
miRNA:   3'- -GUCGUa------------GUCGCGGUCuGU-CCGC------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 180384 0.67 0.735649
Target:  5'- uGGUAcUgGGCGCCGGaguacugcuggugguGCuGGCGGCCGc -3'
miRNA:   3'- gUCGU-AgUCGCGGUC---------------UGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 117953 0.67 0.731891
Target:  5'- gAGCAUCAuCGC--GGC-GGCGGCCAg -3'
miRNA:   3'- gUCGUAGUcGCGguCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 59645 0.67 0.731891
Target:  5'- aGGCGUUGGUGCggCAGACGcuGGCGcGCCu -3'
miRNA:   3'- gUCGUAGUCGCG--GUCUGU--CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 110987 0.67 0.731891
Target:  5'- gGGCA-CGGCcacgggccCCAGcaGCAGGCGGCCc -3'
miRNA:   3'- gUCGUaGUCGc-------GGUC--UGUCCGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.