Results 101 - 120 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 224011 | 0.67 | 0.731891 |
Target: 5'- -uGCggCAGCGgCGGGCccGGCGGUCGg -3' miRNA: 3'- guCGuaGUCGCgGUCUGu-CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 30329 | 0.67 | 0.731891 |
Target: 5'- cCAGCAaCuGCGCCAG-CGagucGGCGGCg- -3' miRNA: 3'- -GUCGUaGuCGCGGUCuGU----CCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 39874 | 0.67 | 0.731891 |
Target: 5'- aCGGCgAUCGGgCGCCGuACAGGguguUGGCCGa -3' miRNA: 3'- -GUCG-UAGUC-GCGGUcUGUCC----GCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 117953 | 0.67 | 0.731891 |
Target: 5'- gAGCAUCAuCGC--GGC-GGCGGCCAg -3' miRNA: 3'- gUCGUAGUcGCGguCUGuCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 59169 | 0.67 | 0.731891 |
Target: 5'- gCGGCA-CGGCGCC--GCGGGCaGUCAg -3' miRNA: 3'- -GUCGUaGUCGCGGucUGUCCGcCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 198368 | 0.67 | 0.72244 |
Target: 5'- aAGaagUAGCGCCGGACggcguuguggcGGGCGGCg- -3' miRNA: 3'- gUCguaGUCGCGGUCUG-----------UCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 142430 | 0.67 | 0.72244 |
Target: 5'- aCAGCAgCAGCGCCGccGAagccuCGGGC-GCCAc -3' miRNA: 3'- -GUCGUaGUCGCGGU--CU-----GUCCGcCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 16999 | 0.67 | 0.72244 |
Target: 5'- aCAGCA--GGCGCCcgcGGugGcGGCGGCgCAg -3' miRNA: 3'- -GUCGUagUCGCGG---UCugU-CCGCCG-GU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 181380 | 0.67 | 0.72244 |
Target: 5'- aCAGCcugUAGCGCCAGACcguguccgacggAGGUGaCCAg -3' miRNA: 3'- -GUCGua-GUCGCGGUCUG------------UCCGCcGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 163693 | 0.67 | 0.72244 |
Target: 5'- aAGag-CGGCGCCA-AC-GGCGGCCAc -3' miRNA: 3'- gUCguaGUCGCGGUcUGuCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 140185 | 0.67 | 0.72244 |
Target: 5'- gCAGCucuUCauAGCGCUccuGGAUcuuGGCGGCCGa -3' miRNA: 3'- -GUCGu--AG--UCGCGG---UCUGu--CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 70919 | 0.67 | 0.72244 |
Target: 5'- gAGcCGUCAGCGCCAG-CAGG-GuCCAc -3' miRNA: 3'- gUC-GUAGUCGCGGUCuGUCCgCcGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 56404 | 0.68 | 0.712919 |
Target: 5'- gGGCAggacuccucgCAGCGCCGGuACucGCGGUCGa -3' miRNA: 3'- gUCGUa---------GUCGCGGUC-UGucCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 134155 | 0.68 | 0.712919 |
Target: 5'- -uGCAUCucGuCGCaCAGGUAGGUGGCCAu -3' miRNA: 3'- guCGUAGu-C-GCG-GUCUGUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 169419 | 0.68 | 0.712919 |
Target: 5'- cCAGCAcgccgUAG-GCCAG-CAGGCGGUCc -3' miRNA: 3'- -GUCGUa----GUCgCGGUCuGUCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 184783 | 0.68 | 0.712919 |
Target: 5'- gGGCAaCGcGCGCCuGGACGcccuGGUGGCCGc -3' miRNA: 3'- gUCGUaGU-CGCGG-UCUGU----CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 128017 | 0.68 | 0.712919 |
Target: 5'- gGGUcgCGGCcgucCCAGAgcgcgugcccgUAGGCGGCCAg -3' miRNA: 3'- gUCGuaGUCGc---GGUCU-----------GUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 69760 | 0.68 | 0.712919 |
Target: 5'- uGGCAcaAGUGCaugauCGGACGGGCGaGCCGg -3' miRNA: 3'- gUCGUagUCGCG-----GUCUGUCCGC-CGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 31676 | 0.68 | 0.712919 |
Target: 5'- gCAGC-UCGGCGUUcuccaggugaaAGugGGGCGGCg- -3' miRNA: 3'- -GUCGuAGUCGCGG-----------UCugUCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 122508 | 0.68 | 0.712919 |
Target: 5'- gGGCcaacgCGGCGgCGGGCAGGcCGGCg- -3' miRNA: 3'- gUCGua---GUCGCgGUCUGUCC-GCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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