Results 121 - 140 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14147 | 5' | -60.2 | NC_003521.1 | + | 30095 | 0.68 | 0.703334 |
Target: 5'- aCGGUAgCAGCGCCgaGGGCuGGuuGCCAg -3' miRNA: 3'- -GUCGUaGUCGCGG--UCUGuCCgcCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 91653 | 0.68 | 0.703334 |
Target: 5'- uGGCGaCGcGCGCCgAGACggacgacgAGGUGGCCAc -3' miRNA: 3'- gUCGUaGU-CGCGG-UCUG--------UCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 106757 | 0.68 | 0.703334 |
Target: 5'- -cGCGUCcagGGCGCC---CAGGCGGUCGa -3' miRNA: 3'- guCGUAG---UCGCGGucuGUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 124462 | 0.68 | 0.703334 |
Target: 5'- gCAGCAgCAGCucgGCCucguCGGGCGGCUg -3' miRNA: 3'- -GUCGUaGUCG---CGGucu-GUCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 348 | 0.68 | 0.703334 |
Target: 5'- aAGCGUgAGCuGCCGGA--GGCGGCg- -3' miRNA: 3'- gUCGUAgUCG-CGGUCUguCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 142663 | 0.68 | 0.693695 |
Target: 5'- uCGGCG-CAGCGCCGucagcagcGAC-GGCGGCa- -3' miRNA: 3'- -GUCGUaGUCGCGGU--------CUGuCCGCCGgu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 31712 | 0.68 | 0.693695 |
Target: 5'- gCAGCAUguGCGCgugcugGGACGccGCGGCCAc -3' miRNA: 3'- -GUCGUAguCGCGg-----UCUGUc-CGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 95645 | 0.68 | 0.693695 |
Target: 5'- gCAGCA--GGUGCCAGACGGaGUugcgcgacuGGCCGc -3' miRNA: 3'- -GUCGUagUCGCGGUCUGUC-CG---------CCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 227497 | 0.68 | 0.693695 |
Target: 5'- aCAGgAUUAGuUGCCAcGGCAGGCaGCCc -3' miRNA: 3'- -GUCgUAGUC-GCGGU-CUGUCCGcCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 113355 | 0.68 | 0.684007 |
Target: 5'- -cGCAucUCGGCGCU-GGCGGGCgucaacaacGGCCAg -3' miRNA: 3'- guCGU--AGUCGCGGuCUGUCCG---------CCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 98221 | 0.68 | 0.684007 |
Target: 5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3' miRNA: 3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 162141 | 0.68 | 0.684007 |
Target: 5'- -uGCAUgAGCG-CAGAC-GGCGGCUu -3' miRNA: 3'- guCGUAgUCGCgGUCUGuCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 220118 | 0.68 | 0.684007 |
Target: 5'- --aCGUCAcGCGCCAGguugGCGGGCGGUUc -3' miRNA: 3'- gucGUAGU-CGCGGUC----UGUCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 32091 | 0.68 | 0.683037 |
Target: 5'- aCGGC--CAGCGCCAugcguuuGGCGGcGCGGCUg -3' miRNA: 3'- -GUCGuaGUCGCGGU-------CUGUC-CGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 91987 | 0.68 | 0.674281 |
Target: 5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3' miRNA: 3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 127073 | 0.68 | 0.674281 |
Target: 5'- -cGCggCAGgGCCAccgacGAgAGGCGGCCc -3' miRNA: 3'- guCGuaGUCgCGGU-----CUgUCCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 227606 | 0.68 | 0.674281 |
Target: 5'- aGGCuUgGGCGCCGGucggcccuccaACAcGGCGGCCc -3' miRNA: 3'- gUCGuAgUCGCGGUC-----------UGU-CCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 216617 | 0.68 | 0.674281 |
Target: 5'- gCAGCAgUCGaCGgUAGGCGGGCGcGCCGa -3' miRNA: 3'- -GUCGU-AGUcGCgGUCUGUCCGC-CGGU- -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 133161 | 0.68 | 0.674281 |
Target: 5'- cCAGCAgCAGC-CgGGACAccagcaguGGCGGCCu -3' miRNA: 3'- -GUCGUaGUCGcGgUCUGU--------CCGCCGGu -5' |
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14147 | 5' | -60.2 | NC_003521.1 | + | 84605 | 0.68 | 0.664523 |
Target: 5'- cCAGC-UCGGCGUCGGugAcGGCcaggucguccucGGCCAu -3' miRNA: 3'- -GUCGuAGUCGCGGUCugU-CCG------------CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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