miRNA display CGI


Results 41 - 60 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 55018 0.72 0.437799
Target:  5'- aGGCG-CAGCGCCAG-CGucGGCGGCUc -3'
miRNA:   3'- gUCGUaGUCGCGGUCuGU--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 55642 0.66 0.795364
Target:  5'- gGGCGUCA-CGCUccACAGGUGcGCCAc -3'
miRNA:   3'- gUCGUAGUcGCGGucUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 55719 0.73 0.403245
Target:  5'- cCAGCAugUCGGCGCgCAGcgccucccagcgcGCGGGCGGCa- -3'
miRNA:   3'- -GUCGU--AGUCGCG-GUC-------------UGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 55828 0.72 0.482135
Target:  5'- cCAGUcgCAGCGC--GGCAGGCcGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCGguCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 56404 0.68 0.712919
Target:  5'- gGGCAggacuccucgCAGCGCCGGuACucGCGGUCGa -3'
miRNA:   3'- gUCGUa---------GUCGCGGUC-UGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 56916 0.67 0.768816
Target:  5'- cCGGUA-CAGCGCCGuGACGGccGUGGCUc -3'
miRNA:   3'- -GUCGUaGUCGCGGU-CUGUC--CGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 58476 0.66 0.794497
Target:  5'- cCAGgGUCugccaauGGC-CCAGACAGGUGGUg- -3'
miRNA:   3'- -GUCgUAG-------UCGcGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 59169 0.67 0.731891
Target:  5'- gCGGCA-CGGCGCC--GCGGGCaGUCAg -3'
miRNA:   3'- -GUCGUaGUCGCGGucUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 59506 0.69 0.644943
Target:  5'- cCAGa--CGGCGCCcuGGcccGCGGGCGGCCu -3'
miRNA:   3'- -GUCguaGUCGCGG--UC---UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 59645 0.67 0.731891
Target:  5'- aGGCGUUGGUGCggCAGACGcuGGCGcGCCu -3'
miRNA:   3'- gUCGUAGUCGCG--GUCUGU--CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 61611 0.66 0.777788
Target:  5'- gGGCG-CAGCGCUccaacGGACGGGUGaucGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG-----UCUGUCCGC---CGGu -5'
14147 5' -60.2 NC_003521.1 + 61923 0.67 0.750544
Target:  5'- uCGGCGUucaCGGCGUaucucaAGACgcaacAGGCGGCCu -3'
miRNA:   3'- -GUCGUA---GUCGCGg-----UCUG-----UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 65775 0.66 0.803953
Target:  5'- -cGCAUCAcaccGcCGCCGGACAacuucGGCcGGCCc -3'
miRNA:   3'- guCGUAGU----C-GCGGUCUGU-----CCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 68666 0.69 0.635135
Target:  5'- cCAGCcgCAGaGCguGGaagAGGCGGCCAu -3'
miRNA:   3'- -GUCGuaGUCgCGguCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 69760 0.68 0.712919
Target:  5'- uGGCAcaAGUGCaugauCGGACGGGCGaGCCGg -3'
miRNA:   3'- gUCGUagUCGCG-----GUCUGUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 70234 0.66 0.786639
Target:  5'- -cGCAgCAGgGCUAGGCAgGGCGaGCUg -3'
miRNA:   3'- guCGUaGUCgCGGUCUGU-CCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 70919 0.67 0.72244
Target:  5'- gAGcCGUCAGCGCCAG-CAGG-GuCCAc -3'
miRNA:   3'- gUC-GUAGUCGCGGUCuGUCCgCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 74185 0.71 0.538015
Target:  5'- -cGCcgCGGCGCCcGGCGcGCGGCCc -3'
miRNA:   3'- guCGuaGUCGCGGuCUGUcCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 74223 0.66 0.803953
Target:  5'- gCAGCAggccgUCGGCGCCGuGAC-GGUGGaCGa -3'
miRNA:   3'- -GUCGU-----AGUCGCGGU-CUGuCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 74693 0.7 0.586199
Target:  5'- gCAGCAgcgacggCGGCGCCGcGGCA-GCGGCUc -3'
miRNA:   3'- -GUCGUa------GUCGCGGU-CUGUcCGCCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.