miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 74887 0.66 0.786639
Target:  5'- aCGGCGcugCuGCGCgAGACGguGGCGGCg- -3'
miRNA:   3'- -GUCGUa--GuCGCGgUCUGU--CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 75034 0.73 0.412346
Target:  5'- -uGCGacggCAGCGCCAG-CGGGCuGGCCu -3'
miRNA:   3'- guCGUa---GUCGCGGUCuGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 75541 0.7 0.576478
Target:  5'- uCAGUucagCGGCGCCGG-C-GGCGGCUAc -3'
miRNA:   3'- -GUCGua--GUCGCGGUCuGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 76365 0.71 0.519109
Target:  5'- gCGGCAgCGGCGaCCGuGACGGccGCGGCCGc -3'
miRNA:   3'- -GUCGUaGUCGC-GGU-CUGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 77409 0.67 0.741261
Target:  5'- aGGCAgCGGCaGCCGacGACGGGgccaCGGCCGa -3'
miRNA:   3'- gUCGUaGUCG-CGGU--CUGUCC----GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 77730 0.72 0.437799
Target:  5'- uGGCGcUGGCGCCcgaGGACGGGCcGGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG---UCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 79753 0.69 0.635135
Target:  5'- -cGaCAUCAGCGCCGGGCcGGUgaGGaCCGg -3'
miRNA:   3'- guC-GUAGUCGCGGUCUGuCCG--CC-GGU- -5'
14147 5' -60.2 NC_003521.1 + 84605 0.68 0.664523
Target:  5'- cCAGC-UCGGCGUCGGugAcGGCcaggucguccucGGCCAu -3'
miRNA:   3'- -GUCGuAGUCGCGGUCugU-CCG------------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 84676 0.66 0.823969
Target:  5'- -cGCAgCAGCGCCAGcaGCugcgugcacaccuccAGGCcGGCCu -3'
miRNA:   3'- guCGUaGUCGCGGUC--UG---------------UCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 85107 0.66 0.777788
Target:  5'- --cCAUCGGCGgCGGcagcgGCGGGCGGCa- -3'
miRNA:   3'- gucGUAGUCGCgGUC-----UGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 85212 0.69 0.635135
Target:  5'- -uGCGUCAcccggcgccGCGCCGGACAGagacauGgGGCCGg -3'
miRNA:   3'- guCGUAGU---------CGCGGUCUGUC------CgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 87785 0.66 0.777788
Target:  5'- gGGCcgCcuCGUCGGucuCGGGCGGCCu -3'
miRNA:   3'- gUCGuaGucGCGGUCu--GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 91653 0.68 0.703334
Target:  5'- uGGCGaCGcGCGCCgAGACggacgacgAGGUGGCCAc -3'
miRNA:   3'- gUCGUaGU-CGCGG-UCUG--------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 91939 0.69 0.605725
Target:  5'- uCGGCGUCGGCcacggccgagGCCAGGCuGGCGuaGCUg -3'
miRNA:   3'- -GUCGUAGUCG----------CGGUCUGuCCGC--CGGu -5'
14147 5' -60.2 NC_003521.1 + 91987 0.68 0.674281
Target:  5'- aCGGCAcgcaccUCGGCcgaGGGCAGGCGGUCGc -3'
miRNA:   3'- -GUCGU------AGUCGcggUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 95645 0.68 0.693695
Target:  5'- gCAGCA--GGUGCCAGACGGaGUugcgcgacuGGCCGc -3'
miRNA:   3'- -GUCGUagUCGCGGUCUGUC-CG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 95718 0.76 0.293174
Target:  5'- cCGGUAguuaGGCGCCAGguccaGCAGGCGGCUg -3'
miRNA:   3'- -GUCGUag--UCGCGGUC-----UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 96614 0.69 0.628268
Target:  5'- aGGCGUCGGCgcacugcugcagcuuGCCGuucuccagcgcgcGGCAGGCGGCg- -3'
miRNA:   3'- gUCGUAGUCG---------------CGGU-------------CUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 98221 0.68 0.684007
Target:  5'- gGGCAgCGGCGUgGGAgGcggggaggcgggGGCGGCCAc -3'
miRNA:   3'- gUCGUaGUCGCGgUCUgU------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98263 0.66 0.812399
Target:  5'- gGGCA-CGGCgaGCCuGGCGGGCGacaaGCCGu -3'
miRNA:   3'- gUCGUaGUCG--CGGuCUGUCCGC----CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.