miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 98477 0.72 0.482135
Target:  5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 98878 0.7 0.566793
Target:  5'- cCAGCAggUgGGCGCCcacgcgcugcacGGuCAGGCGGCUg -3'
miRNA:   3'- -GUCGU--AgUCGCGG------------UCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 99411 0.66 0.803953
Target:  5'- gCAGCGUCuGCucGUCgaagGGACAGuaGGCCAg -3'
miRNA:   3'- -GUCGUAGuCG--CGG----UCUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 99449 0.66 0.795364
Target:  5'- aAGCGguagGGCGCCAGACAGcGCuGGauCCGg -3'
miRNA:   3'- gUCGUag--UCGCGGUCUGUC-CG-CC--GGU- -5'
14147 5' -60.2 NC_003521.1 + 100177 0.7 0.59595
Target:  5'- gGGUAg-GGCGCCAGgcGCAGGCucucGGCCGu -3'
miRNA:   3'- gUCGUagUCGCGGUC--UGUCCG----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 101183 0.75 0.320249
Target:  5'- aCGGCGUCcGCGCCcGGCGGGCGGaUCu -3'
miRNA:   3'- -GUCGUAGuCGCGGuCUGUCCGCC-GGu -5'
14147 5' -60.2 NC_003521.1 + 101500 0.72 0.446482
Target:  5'- gAGCAgCGGCgGCCAGAC--GCGGCCGa -3'
miRNA:   3'- gUCGUaGUCG-CGGUCUGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 101927 0.66 0.812399
Target:  5'- cCGGCGUacuCGCCGGugGGGUccacguGGCCGc -3'
miRNA:   3'- -GUCGUAgucGCGGUCugUCCG------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 101997 0.66 0.786639
Target:  5'- aGGCcgUAGcCGCCGccauCAGGCGcGCCAu -3'
miRNA:   3'- gUCGuaGUC-GCGGUcu--GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 102321 0.7 0.566793
Target:  5'- cCAGCGggcccgugaugaUCAGCuGgUAGACGGGCGGCa- -3'
miRNA:   3'- -GUCGU------------AGUCG-CgGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 102336 0.68 0.664523
Target:  5'- -cGCGUgGGCGCCgacgccGGGguGGCGGCa- -3'
miRNA:   3'- guCGUAgUCGCGG------UCUguCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 102776 0.67 0.750544
Target:  5'- gCAGCggCuGCGCgAuGACGcgccGGCGGCCGc -3'
miRNA:   3'- -GUCGuaGuCGCGgU-CUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 102967 0.73 0.412346
Target:  5'- gGGCGUCGGgGCuCuGGCgGGGCGGCCc -3'
miRNA:   3'- gUCGUAGUCgCG-GuCUG-UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 103218 0.76 0.293174
Target:  5'- aGGCGUcCAGCGCgCGGuACAGGuCGGCCu -3'
miRNA:   3'- gUCGUA-GUCGCG-GUC-UGUCC-GCCGGu -5'
14147 5' -60.2 NC_003521.1 + 103335 0.7 0.576478
Target:  5'- -cGCGcCAGCGCCGuGCGGuaGGCCAg -3'
miRNA:   3'- guCGUaGUCGCGGUcUGUCcgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103653 0.67 0.741261
Target:  5'- gCAGC-UCGGCGgCGGccgcuGCGGccGCGGCCAu -3'
miRNA:   3'- -GUCGuAGUCGCgGUC-----UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 103869 0.71 0.490346
Target:  5'- uGGCgAUCAGCGCCgacagggGGAUGGGCuGCCGc -3'
miRNA:   3'- gUCG-UAGUCGCGG-------UCUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 104261 0.69 0.615519
Target:  5'- gCAGCggCAGCuGCCAGuC-GGCGGCgAa -3'
miRNA:   3'- -GUCGuaGUCG-CGGUCuGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 106105 0.69 0.615519
Target:  5'- aGGCcUCGG-GCaCGGGCGuGGCGGCCGu -3'
miRNA:   3'- gUCGuAGUCgCG-GUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106295 0.73 0.420729
Target:  5'- gGGCAaCAGCaaCCAGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGUaGUCGc-GGUCUGuCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.