miRNA display CGI


Results 101 - 120 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 106705 0.66 0.812399
Target:  5'- uCAGgGUCAGCuaGgCGcGCAGGaCGGCCAc -3'
miRNA:   3'- -GUCgUAGUCG--CgGUcUGUCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 106757 0.68 0.703334
Target:  5'- -cGCGUCcagGGCGCC---CAGGCGGUCGa -3'
miRNA:   3'- guCGUAG---UCGCGGucuGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 107004 1.07 0.002243
Target:  5'- uCAGCAUCAGCGCCAGACAGGCGGCCAc -3'
miRNA:   3'- -GUCGUAGUCGCGGUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 107337 0.72 0.436936
Target:  5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 108028 0.72 0.482135
Target:  5'- --uCGUCGGCGUCAGGC-GGCGGCgGg -3'
miRNA:   3'- gucGUAGUCGCGGUCUGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 108132 0.66 0.820694
Target:  5'- -cGCGUCc-CGCCAGcCGGGCGcgaGCCGa -3'
miRNA:   3'- guCGUAGucGCGGUCuGUCCGC---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 108371 0.67 0.768816
Target:  5'- aAGCAccauaAG-GCCAGACAGGC-GCCGc -3'
miRNA:   3'- gUCGUag---UCgCGGUCUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109340 0.71 0.519109
Target:  5'- aGGCggCAGCaGCCGGcGCAGGaGGCCGa -3'
miRNA:   3'- gUCGuaGUCG-CGGUC-UGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109352 0.67 0.763378
Target:  5'- ---gGUCAGCGCCgagaaggacucguccAGcgGCAGGCaGGCCAg -3'
miRNA:   3'- gucgUAGUCGCGG---------------UC--UGUCCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 109914 0.71 0.509754
Target:  5'- aCAGCGUCGuGUuGCCuGACGGGgGGUCGa -3'
miRNA:   3'- -GUCGUAGU-CG-CGGuCUGUCCgCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110318 0.66 0.777788
Target:  5'- gCAGCcgCAGgGCCAucauGAC--GCGGCCGc -3'
miRNA:   3'- -GUCGuaGUCgCGGU----CUGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110418 0.69 0.635135
Target:  5'- uCAGCGUgAGCGUgAGaACGGaGCGGCg- -3'
miRNA:   3'- -GUCGUAgUCGCGgUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 110637 0.69 0.635135
Target:  5'- uCGGCAUCucgccgGGCGCCGGcACGgucacggcccGGuCGGCCAg -3'
miRNA:   3'- -GUCGUAG------UCGCGGUC-UGU----------CC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 110987 0.67 0.731891
Target:  5'- gGGCA-CGGCcacgggccCCAGcaGCAGGCGGCCc -3'
miRNA:   3'- gUCGUaGUCGc-------GGUC--UGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 111031 0.66 0.786639
Target:  5'- aCGGCuUCAGCGCCc--CAGGCGaCCc -3'
miRNA:   3'- -GUCGuAGUCGCGGucuGUCCGCcGGu -5'
14147 5' -60.2 NC_003521.1 + 111090 0.69 0.605725
Target:  5'- aCGGCGcggacgcgcUCGGCGUC-GACGGGCcgcGGCCGg -3'
miRNA:   3'- -GUCGU---------AGUCGCGGuCUGUCCG---CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 111235 0.66 0.795364
Target:  5'- gAGCGUC-GCgGCCGGcGCGGcGCGGCgGa -3'
miRNA:   3'- gUCGUAGuCG-CGGUC-UGUC-CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 113355 0.68 0.684007
Target:  5'- -cGCAucUCGGCGCU-GGCGGGCgucaacaacGGCCAg -3'
miRNA:   3'- guCGU--AGUCGCGGuCUGUCCG---------CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113824 0.67 0.756069
Target:  5'- gGGCAccgccacgucgggCAGCGgCAGcgGGGCGGCCGg -3'
miRNA:   3'- gUCGUa------------GUCGCgGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 113947 0.67 0.741261
Target:  5'- uCGGCGUCgacacggaggaGGCagaCAGacgGCAGGCGGCCGg -3'
miRNA:   3'- -GUCGUAG-----------UCGcg-GUC---UGUCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.