miRNA display CGI


Results 121 - 140 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 115376 0.69 0.615519
Target:  5'- uGGC--CAGgGCCGGcaugugcagggcGCGGGCGGCCGc -3'
miRNA:   3'- gUCGuaGUCgCGGUC------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 115653 0.73 0.404067
Target:  5'- -cGUGUCGGCGCCccaguGGCgggugaagaAGGCGGCCAg -3'
miRNA:   3'- guCGUAGUCGCGGu----CUG---------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 115834 0.72 0.437799
Target:  5'- uCAGCA--GGCGCuggcuCAGGCGGGCGGCgCAc -3'
miRNA:   3'- -GUCGUagUCGCG-----GUCUGUCCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 117953 0.67 0.731891
Target:  5'- gAGCAUCAuCGC--GGC-GGCGGCCAg -3'
miRNA:   3'- gUCGUAGUcGCGguCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 118917 0.7 0.59595
Target:  5'- --uCGUCGGCGCCGcGGCguGGGCGGCg- -3'
miRNA:   3'- gucGUAGUCGCGGU-CUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 119084 0.66 0.803953
Target:  5'- gGGCAagCAG-GUguGGCAGGCGcGCCu -3'
miRNA:   3'- gUCGUa-GUCgCGguCUGUCCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 120064 0.66 0.786639
Target:  5'- cCAGUggCAG-GCCGGcaucCAGGCGcGCCAc -3'
miRNA:   3'- -GUCGuaGUCgCGGUCu---GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 121145 0.66 0.786639
Target:  5'- gCAGCAUgAGCauGUCgcggucgaagaAGAagaGGGCGGCCAg -3'
miRNA:   3'- -GUCGUAgUCG--CGG-----------UCUg--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 121777 0.7 0.59595
Target:  5'- uGGUGUCGGC-CaCGGGCAGGUGGCg- -3'
miRNA:   3'- gUCGUAGUCGcG-GUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122508 0.68 0.712919
Target:  5'- gGGCcaacgCGGCGgCGGGCAGGcCGGCg- -3'
miRNA:   3'- gUCGua---GUCGCgGUCUGUCC-GCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122659 0.7 0.59595
Target:  5'- gGGCGUCGucuGCGgCGGugGGGUGGCg- -3'
miRNA:   3'- gUCGUAGU---CGCgGUCugUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 122737 0.7 0.593021
Target:  5'- gGGCGaCGGCGCCGccgauggcuGACAccgggcacggggauGGCGGCCGa -3'
miRNA:   3'- gUCGUaGUCGCGGU---------CUGU--------------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123204 0.7 0.59595
Target:  5'- -cGCAUaCGGCGCCggguaGGACggGGGCGGCg- -3'
miRNA:   3'- guCGUA-GUCGCGG-----UCUG--UCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 123349 0.69 0.61258
Target:  5'- cCAGCGccgCGGCcguggccuccgacaGCCGcaccGACAGGCGGCUAg -3'
miRNA:   3'- -GUCGUa--GUCG--------------CGGU----CUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123557 0.71 0.509754
Target:  5'- gGGCAggugCAGCGCCAGGCAGuCGuGCa- -3'
miRNA:   3'- gUCGUa---GUCGCGGUCUGUCcGC-CGgu -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 124462 0.68 0.703334
Target:  5'- gCAGCAgCAGCucgGCCucguCGGGCGGCUg -3'
miRNA:   3'- -GUCGUaGUCG---CGGucu-GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 125277 0.69 0.615519
Target:  5'- gCAGCA-CGGCGCUccguCAGGCGaGCCGc -3'
miRNA:   3'- -GUCGUaGUCGCGGucu-GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 125408 0.69 0.615519
Target:  5'- -cGCcgCGGCGCUgaguccggAGGCcguGGCGGCCGc -3'
miRNA:   3'- guCGuaGUCGCGG--------UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 126310 0.69 0.605725
Target:  5'- -cGUggCGGCGgUGGGCAcGGCGGCCAc -3'
miRNA:   3'- guCGuaGUCGCgGUCUGU-CCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.