miRNA display CGI


Results 41 - 60 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 191016 0.66 0.803953
Target:  5'- -uGCA-CGGCGcCCAGccauuCGGGCGGCa- -3'
miRNA:   3'- guCGUaGUCGC-GGUCu----GUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 186814 0.7 0.590096
Target:  5'- aCGGCGUgGGCGaCCAGAUcugacgguccugcgaAuGGCGGCCc -3'
miRNA:   3'- -GUCGUAgUCGC-GGUCUG---------------U-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 186767 0.67 0.741261
Target:  5'- gCGGCAUCggcggaGGCGgCGGugGuGGCGGCg- -3'
miRNA:   3'- -GUCGUAG------UCGCgGUCugU-CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 186605 0.67 0.741261
Target:  5'- cCGGCAgUCGGUacuGCCGGACAc-CGGCCAg -3'
miRNA:   3'- -GUCGU-AGUCG---CGGUCUGUccGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 184783 0.68 0.712919
Target:  5'- gGGCAaCGcGCGCCuGGACGcccuGGUGGCCGc -3'
miRNA:   3'- gUCGUaGU-CGCGG-UCUGU----CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 184369 0.71 0.509754
Target:  5'- uGGCG-CGGCGCCucucGGACcugggccacgAGGCGGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG----UCUG----------UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 184030 0.69 0.605725
Target:  5'- -cGCG-CGaCGCCGGuuGGGCGGCCAu -3'
miRNA:   3'- guCGUaGUcGCGGUCugUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 181984 0.69 0.615519
Target:  5'- gGGCAUCcGCGCCAGuaacguCAcGGCcGCCAc -3'
miRNA:   3'- gUCGUAGuCGCGGUCu-----GU-CCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 181380 0.67 0.72244
Target:  5'- aCAGCcugUAGCGCCAGACcguguccgacggAGGUGaCCAg -3'
miRNA:   3'- -GUCGua-GUCGCGGUCUG------------UCCGCcGGU- -5'
14147 5' -60.2 NC_003521.1 + 180669 0.66 0.812399
Target:  5'- aGGCGUUGGCGCgAGGCcuGCGuGCUc -3'
miRNA:   3'- gUCGUAGUCGCGgUCUGucCGC-CGGu -5'
14147 5' -60.2 NC_003521.1 + 180384 0.67 0.735649
Target:  5'- uGGUAcUgGGCGCCGGaguacugcuggugguGCuGGCGGCCGc -3'
miRNA:   3'- gUCGU-AgUCGCGGUC---------------UGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 178952 0.66 0.820694
Target:  5'- gAGCGUCAGCuGCgaccacgaAGACGcGGCGGUgGa -3'
miRNA:   3'- gUCGUAGUCG-CGg-------UCUGU-CCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 172308 0.67 0.750544
Target:  5'- cCGGUGUCgguGGCGCCAGGCcggucGCGGCgGa -3'
miRNA:   3'- -GUCGUAG---UCGCGGUCUGuc---CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 172076 0.72 0.476697
Target:  5'- uCAGgacCGUCAGCGgCGGcgugaugaaguccguGCGGGCGGCCGa -3'
miRNA:   3'- -GUC---GUAGUCGCgGUC---------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 169449 0.69 0.644943
Target:  5'- aCGGCGUCGGCGgCGG-CGGGUucgucGCCAg -3'
miRNA:   3'- -GUCGUAGUCGCgGUCuGUCCGc----CGGU- -5'
14147 5' -60.2 NC_003521.1 + 169419 0.68 0.712919
Target:  5'- cCAGCAcgccgUAG-GCCAG-CAGGCGGUCc -3'
miRNA:   3'- -GUCGUa----GUCgCGGUCuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 168989 0.67 0.759732
Target:  5'- -cGCGUCGGuCGCgggAGGCGGGCgacggGGCCGg -3'
miRNA:   3'- guCGUAGUC-GCGg--UCUGUCCG-----CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168660 0.67 0.750544
Target:  5'- aGGCAUgccgaCGGCGCCGGAgGucccugguGGCaGGCCGu -3'
miRNA:   3'- gUCGUA-----GUCGCGGUCUgU--------CCG-CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 168548 0.66 0.80988
Target:  5'- gCGGCggCGGCGCUGGcgggcugcggguaaGguGGCGGCUg -3'
miRNA:   3'- -GUCGuaGUCGCGGUC--------------UguCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 168510 0.69 0.625324
Target:  5'- aGGCGgaggaCGGCGacgccagCAGGCuGGCGGCCAg -3'
miRNA:   3'- gUCGUa----GUCGCg------GUCUGuCCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.