miRNA display CGI


Results 61 - 80 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 168399 0.66 0.777788
Target:  5'- uGGCGUUGcCGCCguugguggcuaGGGCGGGCGGCa- -3'
miRNA:   3'- gUCGUAGUcGCGG-----------UCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 167834 0.68 0.664523
Target:  5'- gAGCAggAGCgGCCAGGCcccccGCGGCCGc -3'
miRNA:   3'- gUCGUagUCG-CGGUCUGuc---CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 167654 0.66 0.786639
Target:  5'- cCAGC-UCcGCGCCAGgucGCAGGCcgaGGCg- -3'
miRNA:   3'- -GUCGuAGuCGCGGUC---UGUCCG---CCGgu -5'
14147 5' -60.2 NC_003521.1 + 167150 0.71 0.537063
Target:  5'- gCAGCGccuUgGGCGCCucGGGCgucuuggAGGCGGCCGc -3'
miRNA:   3'- -GUCGU---AgUCGCGG--UCUG-------UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 166999 0.66 0.820694
Target:  5'- uCGGcCGUCAGCGCguc-CAGGCGGUUg -3'
miRNA:   3'- -GUC-GUAGUCGCGgucuGUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 166631 0.72 0.455259
Target:  5'- aCGGCGUCGggccgcGCGCCGGGCGccgcggcgcaGCGGCCAg -3'
miRNA:   3'- -GUCGUAGU------CGCGGUCUGUc---------CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 165667 0.66 0.777788
Target:  5'- gCGGCAcCAuGCGuCCAGGCauccccAGGuCGGCCGc -3'
miRNA:   3'- -GUCGUaGU-CGC-GGUCUG------UCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 165047 0.67 0.750544
Target:  5'- gCGGCGUCuGCaCCuGG-AGGCGGCCu -3'
miRNA:   3'- -GUCGUAGuCGcGGuCUgUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 164754 0.67 0.756986
Target:  5'- gGGCAUCgcGGuCGCCGGGCGaaccauagugacgcGGCGGgCAc -3'
miRNA:   3'- gUCGUAG--UC-GCGGUCUGU--------------CCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 164436 0.66 0.795364
Target:  5'- -uGCuagCAGCGCCAccGCGGccGCGGCCGu -3'
miRNA:   3'- guCGua-GUCGCGGUc-UGUC--CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 163693 0.67 0.72244
Target:  5'- aAGag-CGGCGCCA-AC-GGCGGCCAc -3'
miRNA:   3'- gUCguaGUCGCGGUcUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 163206 0.69 0.615519
Target:  5'- gCGGCggCAGCGgCAGuaGCuccGGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCgGUC--UGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 162141 0.68 0.684007
Target:  5'- -uGCAUgAGCG-CAGAC-GGCGGCUu -3'
miRNA:   3'- guCGUAgUCGCgGUCUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 161237 0.67 0.768816
Target:  5'- gCGGCggCAGCGgCAGua--GCGGCCAg -3'
miRNA:   3'- -GUCGuaGUCGCgGUCugucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 155937 0.67 0.750544
Target:  5'- aCGGCcuacUC-GCGCCacccGGAcCGGGCGGCCu -3'
miRNA:   3'- -GUCGu---AGuCGCGG----UCU-GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 155645 0.66 0.777788
Target:  5'- gUAGCAgaAGCGCCGugcuGGguGGCGGCgGa -3'
miRNA:   3'- -GUCGUagUCGCGGU----CUguCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 154479 0.69 0.605725
Target:  5'- cCGGCAccgcCGGCGCCGGcaagaccuccaGCAuccaggugcuGGCGGCCAa -3'
miRNA:   3'- -GUCGUa---GUCGCGGUC-----------UGU----------CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 153598 0.73 0.391042
Target:  5'- gCAGCAgCAGCGCCAGGuuGGCGcucagcagcuccugcGCCAg -3'
miRNA:   3'- -GUCGUaGUCGCGGUCUguCCGC---------------CGGU- -5'
14147 5' -60.2 NC_003521.1 + 151810 0.67 0.741261
Target:  5'- -cGCcgUGGCGCCGGugGGGCccgcGGCa- -3'
miRNA:   3'- guCGuaGUCGCGGUCugUCCG----CCGgu -5'
14147 5' -60.2 NC_003521.1 + 151312 0.69 0.615519
Target:  5'- -cGCGcaaGGCgGCCAGGCGGGUGGCg- -3'
miRNA:   3'- guCGUag-UCG-CGGUCUGUCCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.