miRNA display CGI


Results 81 - 100 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 150769 0.66 0.777788
Target:  5'- -cGCGUguGCGCUcgcgcgacgacGGGCGGGCGcgaGCCGc -3'
miRNA:   3'- guCGUAguCGCGG-----------UCUGUCCGC---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 148429 0.66 0.8031
Target:  5'- gGGCggCcGCGCCGGcggcuccAgGGGUGGCCGg -3'
miRNA:   3'- gUCGuaGuCGCGGUC-------UgUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 146351 0.67 0.768816
Target:  5'- aGGCAUCAccGCGCCGuACacgGGGCGGUUc -3'
miRNA:   3'- gUCGUAGU--CGCGGUcUG---UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 145871 0.69 0.615519
Target:  5'- gCGGCGggCGGCGCCGacGACgAGGCcGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU--CUG-UCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 145258 0.66 0.786639
Target:  5'- -uGCAg-GGCGCCuccucGGCcucGGCGGCCAg -3'
miRNA:   3'- guCGUagUCGCGGu----CUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 142663 0.68 0.693695
Target:  5'- uCGGCG-CAGCGCCGucagcagcGAC-GGCGGCa- -3'
miRNA:   3'- -GUCGUaGUCGCGGU--------CUGuCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 142430 0.67 0.72244
Target:  5'- aCAGCAgCAGCGCCGccGAagccuCGGGC-GCCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGU--CU-----GUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 140185 0.67 0.72244
Target:  5'- gCAGCucuUCauAGCGCUccuGGAUcuuGGCGGCCGa -3'
miRNA:   3'- -GUCGu--AG--UCGCGG---UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 140150 0.67 0.772418
Target:  5'- uCAGCAUCAccacuaucaccauccGCaGCCGacgcaacgcGGCGGGaCGGCCGg -3'
miRNA:   3'- -GUCGUAGU---------------CG-CGGU---------CUGUCC-GCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 138917 0.72 0.437799
Target:  5'- cCGGC-UCGGUGUCGGACcacGGCGGCUg -3'
miRNA:   3'- -GUCGuAGUCGCGGUCUGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 138588 0.69 0.644943
Target:  5'- gCGGCAUCu-CGCCGGACaccauguacgAGGUGuGCCAg -3'
miRNA:   3'- -GUCGUAGucGCGGUCUG----------UCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 137510 0.7 0.565827
Target:  5'- -cGCGUCAGCGCCuGcuggaguaccggcGCGuGGUGGCCu -3'
miRNA:   3'- guCGUAGUCGCGGuC-------------UGU-CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 137002 0.76 0.272826
Target:  5'- uCGGCAUCAGCGCgAGcuggccgaggccCGGGCGGUCAa -3'
miRNA:   3'- -GUCGUAGUCGCGgUCu-----------GUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 134947 0.66 0.812399
Target:  5'- cCGGCAUCuGCGCCcuGAUcguGGGCacgcGCCAc -3'
miRNA:   3'- -GUCGUAGuCGCGGu-CUG---UCCGc---CGGU- -5'
14147 5' -60.2 NC_003521.1 + 134155 0.68 0.712919
Target:  5'- -uGCAUCucGuCGCaCAGGUAGGUGGCCAu -3'
miRNA:   3'- guCGUAGu-C-GCG-GUCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 133368 0.66 0.777788
Target:  5'- uCAGCA-CGGUccGCCGGcACAGcGCGGCg- -3'
miRNA:   3'- -GUCGUaGUCG--CGGUC-UGUC-CGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 133161 0.68 0.674281
Target:  5'- cCAGCAgCAGC-CgGGACAccagcaguGGCGGCCu -3'
miRNA:   3'- -GUCGUaGUCGcGgUCUGU--------CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 132603 0.73 0.387028
Target:  5'- gCGGCGUCGGCGuccgcaacggcuuCCAGACucGGCGGCg- -3'
miRNA:   3'- -GUCGUAGUCGC-------------GGUCUGu-CCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 130989 0.66 0.777788
Target:  5'- gAGCA-CGGUacccaGCCuGACgcGGGCGGCCu -3'
miRNA:   3'- gUCGUaGUCG-----CGGuCUG--UCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 130027 0.67 0.741261
Target:  5'- uGGCuuUCAGCGUCauGGAgGGGCacguGGCCAc -3'
miRNA:   3'- gUCGu-AGUCGCGG--UCUgUCCG----CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.