miRNA display CGI


Results 101 - 120 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 129636 0.67 0.768816
Target:  5'- cCAGCccaccguccgCGGCGCCGucGCcgGGGCGGCCGc -3'
miRNA:   3'- -GUCGua--------GUCGCGGUc-UG--UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 129126 0.7 0.586199
Target:  5'- -cGCG-CAGguaCGUCAGGCAGGCGGCg- -3'
miRNA:   3'- guCGUaGUC---GCGGUCUGUCCGCCGgu -5'
14147 5' -60.2 NC_003521.1 + 128908 0.66 0.803953
Target:  5'- gCGGCGUCGGUaCaCAGgucgaaGCGGGCGGCgCGg -3'
miRNA:   3'- -GUCGUAGUCGcG-GUC------UGUCCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 128480 0.66 0.812399
Target:  5'- gGGCAgCGGCGUgAGGCuGuGCGcGCCGg -3'
miRNA:   3'- gUCGUaGUCGCGgUCUGuC-CGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 128434 0.66 0.795364
Target:  5'- uCGGCG-CAcuGCGCCAGcCAGGUGGaCGa -3'
miRNA:   3'- -GUCGUaGU--CGCGGUCuGUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 128405 0.69 0.654741
Target:  5'- gAGCG--GGCGUCGGuccgaaAGGCGGCCGg -3'
miRNA:   3'- gUCGUagUCGCGGUCug----UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 128017 0.68 0.712919
Target:  5'- gGGUcgCGGCcgucCCAGAgcgcgugcccgUAGGCGGCCAg -3'
miRNA:   3'- gUCGuaGUCGc---GGUCU-----------GUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 127846 0.66 0.777788
Target:  5'- cCGGCGcCAGCccGUCGGGCAGGuuGCCc -3'
miRNA:   3'- -GUCGUaGUCG--CGGUCUGUCCgcCGGu -5'
14147 5' -60.2 NC_003521.1 + 127760 0.71 0.52853
Target:  5'- gAGCcgCAGCGUCuccucguagucGGGC-GGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGG-----------UCUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 127376 0.7 0.557151
Target:  5'- gCGGCA--GGUGCguGAUgaaGGGCGGCCAc -3'
miRNA:   3'- -GUCGUagUCGCGguCUG---UCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 127073 0.68 0.674281
Target:  5'- -cGCggCAGgGCCAccgacGAgAGGCGGCCc -3'
miRNA:   3'- guCGuaGUCgCGGU-----CUgUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 126477 0.71 0.508823
Target:  5'- cCAGCGUCaugaccgAGUGCagcacguugGGGCAGGUGGCCGa -3'
miRNA:   3'- -GUCGUAG-------UCGCGg--------UCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 126310 0.69 0.605725
Target:  5'- -cGUggCGGCGgUGGGCAcGGCGGCCAc -3'
miRNA:   3'- guCGuaGUCGCgGUCUGU-CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 125408 0.69 0.615519
Target:  5'- -cGCcgCGGCGCUgaguccggAGGCcguGGCGGCCGc -3'
miRNA:   3'- guCGuaGUCGCGG--------UCUGu--CCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 125277 0.69 0.615519
Target:  5'- gCAGCA-CGGCGCUccguCAGGCGaGCCGc -3'
miRNA:   3'- -GUCGUaGUCGCGGucu-GUCCGC-CGGU- -5'
14147 5' -60.2 NC_003521.1 + 124462 0.68 0.703334
Target:  5'- gCAGCAgCAGCucgGCCucguCGGGCGGCUg -3'
miRNA:   3'- -GUCGUaGUCG---CGGucu-GUCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 123584 0.7 0.566793
Target:  5'- uGGCggCGGCGCCGGGagccgccGCGGCCGu -3'
miRNA:   3'- gUCGuaGUCGCGGUCUguc----CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123557 0.71 0.509754
Target:  5'- gGGCAggugCAGCGCCAGGCAGuCGuGCa- -3'
miRNA:   3'- gUCGUa---GUCGCGGUCUGUCcGC-CGgu -5'
14147 5' -60.2 NC_003521.1 + 123349 0.69 0.61258
Target:  5'- cCAGCGccgCGGCcguggccuccgacaGCCGcaccGACAGGCGGCUAg -3'
miRNA:   3'- -GUCGUa--GUCG--------------CGGU----CUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123204 0.7 0.59595
Target:  5'- -cGCAUaCGGCGCCggguaGGACggGGGCGGCg- -3'
miRNA:   3'- guCGUA-GUCGCGG-----UCUG--UCCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.